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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G063100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GRAS | ||||||||
Protein Properties | Length: 665aa MW: 75579 Da PI: 5.7791 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.1 | 1.8e-107 | 289 | 661 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+++Ll cA+ v ++d+++a++lL+++++++sp gd+ qR+a+yf+++L+arl++ +s+ ++++ ++++ + +e l a++lf +P+ Phvul.011G063100.1 289 LRNVLLMCAQSVYANDNRAATELLKQIRQHSSPFGDASQRVAHYFANGLEARLVGAGSGAHEIFSFLNSKRITAAEFLRAYQLFLSSTPFK 379 6789******************************************************************999****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 kf+++ aN++I+ea++++e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g ++l+++ L +A + +vpfe+++ Phvul.011G063100.1 380 KFTYFFANKMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGfrPLKKLRRLVTVL--LAIRYKVPFEYHA 468 **********************************************************998876666666666666..799********** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldes.vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++++++e++++e+L+++++E +aVn++++ ++lldes v+l+s+r++vL+l+++++P++++ + + + + + F +rf eal +ysa++d+ Phvul.011G063100.1 469 IASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDEStVELNSPRNAVLHLIRKINPNIFTQIIINGSFSVPFFNTRFREALFHYSAIYDM 559 9999******************************986268889************************************************ PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 +++ +pre+++r ++E ellgre+vnv+aceg++r++r et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d + e+++++++g Phvul.011G063100.1 560 FDTVIPRENDWRLTIESELLGREAVNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKEELMAKFRTKLKEYHRD-FIFSEDNNWMIQG 649 ***************************************************************************66.************* PP GRAS 362 WkdrpLvsvSaW 373 Wk+r + ++W Phvul.011G063100.1 650 WKGRIFNASTCW 661 *********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.863 | 263 | 643 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-105 | 289 | 661 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MEHNFPRVDL FDEEESLSYL SDSLGFATMD PPLEENDFSE TAKFISQILM EENVQQNPFY 60 DSLTLQVTEK SFYDTLIGNI SPNQHALVLS PQVETTTTTS NNYNSSFLDE NFPSPDSVSA 120 SASAFQFNPH ILSQSPSFSH GFSDLDSSIA KLLAQNMFND ADSVSQFRRG LEEATKFLPS 180 GPKLVTGLHS NGEEQVNTFG DNSFGWEGRK NHERQEIEEE EEGRRSKQSA LSLVDESDIS 240 DAIDRVFLSV ENVGSEQNSL QNGAVKGEER DGGKGRSKKQ GTKKESVDLR NVLLMCAQSV 300 YANDNRAATE LLKQIRQHSS PFGDASQRVA HYFANGLEAR LVGAGSGAHE IFSFLNSKRI 360 TAAEFLRAYQ LFLSSTPFKK FTYFFANKMI MEAAAKSETV HIIDFGILYG FQWPILIKFL 420 SNREGGPPKL RITGIEFPQP GFRPLKKLRR LVTVLLAIRY KVPFEYHAIA SRNWETIQVE 480 ALKIESNEIV AVNCHMRFEH LLDESTVELN SPRNAVLHLI RKINPNIFTQ IIINGSFSVP 540 FFNTRFREAL FHYSAIYDMF DTVIPRENDW RLTIESELLG REAVNVIACE GSDRVQRPET 600 YKQWQVRNTR AGFKQLPLKE ELMAKFRTKL KEYHRDFIFS EDNNWMIQGW KGRIFNASTC 660 WVPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-49 | 272 | 663 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-49 | 272 | 663 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G063100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406273.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
TrEMBL | A0A0L9T7Y0 | 0.0 | A0A0L9T7Y0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SD34 | 0.0 | A0A0S3SD34_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G06640.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 1e-165 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G063100.1 |