PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G057500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18704.3 Da PI: 9.0015 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.3 | 2.7e-43 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rd vyG+vg i++lqqq++ l+ Phvul.011G057500.1 14 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQDLPMHQRGDAVSSMVYEANARVRDLVYGCVGAISSLQQQIDVLQ 104 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++lal+++e Phvul.011G057500.1 105 TQLALAQAE 113 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.454 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-43 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MKESGGRKQG AASPCAACKL LRRRCAQDCV FAPYFPADEP QKFANVHKVF GASNVNKMLQ 60 DLPMHQRGDA VSSMVYEANA RVRDLVYGCV GAISSLQQQI DVLQTQLALA QAEVAHLRVR 120 QNRPFSSYGP RPNSPTNSGF PSPKTLDSHA KPIFDMDMVM DHASYGSSMW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-49 | 10 | 114 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-49 | 10 | 114 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G057500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090716 | 5e-99 | BT090716.1 Soybean clone JCVI-FLGm-5M9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535054.1 | 1e-111 | LOB domain-containing protein 4 | ||||
Refseq | XP_028180280.1 | 1e-111 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 3e-73 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0B2QS87 | 1e-109 | A0A0B2QS87_GLYSO; LOB domain-containing protein 4 | ||||
TrEMBL | I1L0C8 | 1e-109 | I1L0C8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02510.1 | 1e-110 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-75 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G057500.1 |