PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 969aa MW: 106764 Da PI: 5.7981

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G052100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.9e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Phvul.011G052100.1 597 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 647 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.904	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.36E-22	862	952	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-23	865	947	No hit	No description
PROSITE profile	PS51745	22.936	868	950	IPR000270	PB1 domain
SMART	SM00666	2.1E-23	868	950	IPR000270	PB1 domain
CDD	cd06407	3.37E-30	869	949	No hit	No description
Pfam	PF00564	2.9E-17	871	949	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MEDHFCPKGN ETGYCTSPGA QLEESTSVDG GMKKSASEDM FSNFSELMNF DTYAGWNNSS 60 CMTYQSLANV FSSFSSASYP PSEGLNLVEH GNGPCFMTEV SEIHSGMESS PSCEERGIFQ 120 QMDIQLGFLD EANDSNSFDS KQNRNGTYQQ LNTSDMCNYL ISRSSGRPLD DRILRALSFF 180 MESVDGEMLA QVWVPIKHGD EFILSTSEQP YLLDPKLAGY REVSRAFTFS AEGKKGSCPG 240 LPARVFISHV PEWTSNVGYY NKTEYLRLDH ALNHEIRGSI ALPISDLHSL VPCAVLELVT 300 TKEKPNFDRE LEIVTHALQL VNLKTITPPR LLPQSLSSNK RAALTEILDV LRAVCHAHRL 360 PLALTWIPCS YSEGLGDESE RIQIKEGHTS SNEKCVLCIE ESACYINDGA LGGFVHACVE 420 HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNDD 480 DYILEFFLPV TMTGSSEQQL LLDNLSGTMR RICRSLRTVS DAELTGIEGS VAEFPKEKAT 540 YFFPMSKRNS QIAFINDDHD SVQKMSLKAS NNGIEAVHSQ VVNGSRKQIE KKRSTVEKNV 600 SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVEGGLKF DPYTGGLIAG GSIMQEIDTH KYILFPEKSA VKDPKHATQK PVSVVPAPGS 720 TSENSTIKLD NDDGVCLVGN KLVHSRSVLI SDTSEGGLKK DNASSDDCCE DSKSVAMNDG 780 SSQKGSKRAK NQDCPDQTCS ISLVTDEVEV GVDGGEGIDE HNHLNSSSTT HSSNGSGSMM 840 HGSSSRSQSF ENQKHSKVKS TCVHSGSKMI VKASYRGDTI RFKFDPSAGC FQLYDEVATR 900 FKLQNGSFQL KYLDDEEEWV MLVNDSDLQE CIEILDDIGT RCVKFLVRDV PCVLSSRGSN 960 NCFLSDSS*

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MEDHFCPKGN ETGYCTSPGA QLEESTSVDG GMKKSASEDM FSNFSELMNF DTYAGWNNSS  60
CMTYQSLANV FSSFSSASYP PSEGLNLVEH GNGPCFMTEV SEIHSGMESS PSCEERGIFQ  120
QMDIQLGFLD EANDSNSFDS KQNRNGTYQQ LNTSDMCNYL ISRSSGRPLD DRILRALSFF  180
MESVDGEMLA QVWVPIKHGD EFILSTSEQP YLLDPKLAGY REVSRAFTFS AEGKKGSCPG  240
LPARVFISHV PEWTSNVGYY NKTEYLRLDH ALNHEIRGSI ALPISDLHSL VPCAVLELVT  300
TKEKPNFDRE LEIVTHALQL VNLKTITPPR LLPQSLSSNK RAALTEILDV LRAVCHAHRL  360
PLALTWIPCS YSEGLGDESE RIQIKEGHTS SNEKCVLCIE ESACYINDGA LGGFVHACVE  420
HHLEEGQGIA GKALQSNHPF FYTDVKTYDI GEYPLVHHAR KYNLNAAVAI RLRSTYTNDD  480
DYILEFFLPV TMTGSSEQQL LLDNLSGTMR RICRSLRTVS DAELTGIEGS VAEFPKEKAT  540
YFFPMSKRNS QIAFINDDHD SVQKMSLKAS NNGIEAVHSQ VVNGSRKQIE KKRSTVEKNV  600
SLSVLQQYFS GSLKDAAKSI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVEGGLKF DPYTGGLIAG GSIMQEIDTH KYILFPEKSA VKDPKHATQK PVSVVPAPGS  720
TSENSTIKLD NDDGVCLVGN KLVHSRSVLI SDTSEGGLKK DNASSDDCCE DSKSVAMNDG  780
SSQKGSKRAK NQDCPDQTCS ISLVTDEVEV GVDGGEGIDE HNHLNSSSTT HSSNGSGSMM  840
HGSSSRSQSF ENQKHSKVKS TCVHSGSKMI VKASYRGDTI RFKFDPSAGC FQLYDEVATR  900
FKLQNGSFQL KYLDDEEEWV MLVNDSDLQE CIEILDDIGT RCVKFLVRDV PCVLSSRGSN  960
NCFLSDSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G052100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007131923.1	0.0	hypothetical protein PHAVU_011G052100g
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V7AEB7	0.0	V7AEB7_PHAVU; Uncharacterized protein
STRING	XP_007131923.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G052100.1
Entrez Gene	18615224

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]