PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G042600.1
Common NamePHAVU_011G042600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 154aa    MW: 17193.3 Da    PI: 8.509
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G042600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.84.9e-133188562
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                        ++ +r+++NRe+ArrsR RK++ ++ L + v++L +eN++    ++  +++  ++++e
  Phvul.011G042600.1 31 RKRKRMISNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTSVNITTQQFLSVEAE 88
                        6789***********************************9988888777777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-192791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7142992IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-1130106No hitNo description
SuperFamilySSF579596.88E-133183No hitNo description
PfamPF001701.1E-103174IPR004827Basic-leucine zipper domain
CDDcd147024.41E-203282No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASSSGTCSG SSSLLQNSGS EEDLRAVMDQ RKRKRMISNR ESARRSRMRK QKHLDDLVTQ  60
VAQLRKENQQ ILTSVNITTQ QFLSVEAENS VLRAQVGELS HRLESLNEIV EVLNAGFGNT  120
TFIEPTTNNS FFNPMNMGYL NHPIMASADI LQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13051RKRKRMISNRESARRSRMRKQK
24350RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G042600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-171AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131800.11e-110hypothetical protein PHAVU_011G042600g
SwissprotC0Z2L57e-53BZP44_ARATH; bZIP transcription factor 44
TrEMBLV7AE621e-108V7AE62_PHAVU; Uncharacterized protein
STRINGXP_007131800.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.17e-50G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]