PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G020600.1
Common NamePHAVU_011G020600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 550aa    MW: 60915.5 Da    PI: 6.0832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G020600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3529.5e-1081785492374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L+ecA + +s +  +a + Larl++ +s++g+p+qR+ +yf eAL++++  + ++   + ++++t++++s+e + ++k+ ++++P+ k
  Phvul.011G020600.1 178 LKALTECASFAES-EPDQAAESLARLRKSVSQHGNPTQRVGFYFCEALSRKIWAEKEKAEPTSTSTTTTTTTSEELTLSYKAMNDACPYSK 267
                         689*****96666.67777789********************************8888888888888888889999*************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         f+hltaNqaIlea++g+  +Hi+Df+i qG+QW+aLlqa+a+R++g+p +++i g+ + + g     +l++tg+rL++fA+ l+++fef++
  Phvul.011G020600.1 268 FAHLTANQAILEATDGAANIHILDFGIVQGIQWAALLQAFATRSSGKPnKIKISGIPAIALGasPGPSLSATGNRLSEFAKLLDLNFEFTP 358
                         ********************************************77776*********88889899************************* PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          + + ++ l+ +++ ++p+EalaVn++lql++llde+ +  +   + L+l ksl+Pk+v++ e ea++++  Fl+rf  a++y+sa+f+sl
  Phvul.011G020600.1 359 -ILTPIHHLDHNSFCIDPDEALAVNFMLQLYNLLDEPPTAVD---TALRLAKSLNPKIVTLGEYEASLTRVGFLNRFKTAFNYFSAVFESL 445
                         .799******************************99999888...********************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgslv 359
                         + +lp++s er  vE  llgr+i  v+    a+  e +e  e+Wr  +e+aGF++v+ls++a++qak ll +++ s  +++ e+   g l 
  Phvul.011G020600.1 446 DPNLPADSPERFQVESLLLGRRIDAVIGPGPAR--ESMEDREQWRVLMERAGFESVSLSHYAVSQAKILLWNYGySSLFSLLEStpPGFLS 534
                         **************************9998887..9**************************************9999*999874355666 PP

                GRAS 360 lgWkdrpLvsvSaWr 374
                         l Wkd pL+++S+Wr
  Phvul.011G020600.1 535 LAWKDVPLLTLSSWR 549
                         **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.581151526IPR005202Transcription factor GRAS
PfamPF035143.3E-105178549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIK QKQQQEQQQQ KQQQKHHHQH HPHHHHHHHQ HHLNPLSLHP  60
IPWNNTPNIG YPLHPTDFPD PFQPDPPFHF PDPQSAAAPF RFSDFDSDDW MDSLIAAADT  120
PSWHTNADFP FPSDLNRLIF PSSDTSAAAL PLHQTPPPPA QEPVTAGLSE PESAHPLLKA  180
LTECASFAES EPDQAAESLA RLRKSVSQHG NPTQRVGFYF CEALSRKIWA EKEKAEPTST  240
STTTTTTTSE ELTLSYKAMN DACPYSKFAH LTANQAILEA TDGAANIHIL DFGIVQGIQW  300
AALLQAFATR SSGKPNKIKI SGIPAIALGA SPGPSLSATG NRLSEFAKLL DLNFEFTPIL  360
TPIHHLDHNS FCIDPDEALA VNFMLQLYNL LDEPPTAVDT ALRLAKSLNP KIVTLGEYEA  420
SLTRVGFLNR FKTAFNYFSA VFESLDPNLP ADSPERFQVE SLLLGRRIDA VIGPGPARES  480
MEDREQWRVL MERAGFESVS LSHYAVSQAK ILLWNYGYSS LFSLLESTPP GFLSLAWKDV  540
PLLTLSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1361765493375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G020600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131529.10.0hypothetical protein PHAVU_011G020600g
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLV7AF950.0V7AF95_PHAVU; Uncharacterized protein
STRINGXP_007131529.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-174GRAS family protein