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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G001800.1 | ||||||||
Common Name | PHAVU_011G001800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 191aa MW: 22122 Da PI: 5.446 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.9e-12 | 126 | 171 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av Y+k Lq Phvul.011G001800.1 126 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLHEAVAYVKFLQ 171 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.316 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 123 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.21E-9 | 124 | 175 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-16 | 125 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-9 | 126 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-12 | 126 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MQPNSAARLP SFRSTPAAWL ESVLLKEEEE EEEEQEESEE AEKETLTFTQ LLSTIAAPSP 60 SRRQRQRQNY EIQDYPPTSM PIPNPIAPEE RDASPPHIKM DMFMFEDSAA PCRVRAKRGC 120 ATHPRSIAER VRRTRISDRI RKLQELVPNM DKQTNTADML HEAVAYVKFL QKQIEELTEH 180 QRRCRCMVQE * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G001800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092590 | 3e-91 | BT092590.1 Soybean clone JCVI-FLGm-11E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007131294.1 | 1e-137 | hypothetical protein PHAVU_011G001800g | ||||
TrEMBL | V7AEM8 | 1e-136 | V7AEM8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131294.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9132 | 30 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 7e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G001800.1 |
Entrez Gene | 18614709 |