PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G143000.1
Common NamePHAVU_010G143000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 451aa    MW: 49425.8 Da    PI: 6.0661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G143000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07364404954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Phvul.010G143000.1 364 ARHRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 404
                         599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869355404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-11361412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-13361414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4365404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.64E-5377409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDGLSWDTSQ LEANTQILWN TIQSPPDFEG GYSMSNVLNQ IHELEKAHAH SYSERVIYQS  60
ADATTTSSEI MDEMQRQNTN LLQHAPTMMP VKSGTGASWG ETFTSQSYPS LSVNGAQSMN  120
LISNYMPGFS MAHQQQQQQQ LVKGSQNGKG TCSLESFDCL ISATNSNPDT SVEDDGISMI  180
LSDCRNLWNF SSGSAASTGE SESNASNGRK KDMKCPVNEV DETVSQSSFD QGKTVQSKAN  240
FSKRSPEETE MIKVGATGSG SCFSIVQNSS SIEEGGFRLI SDDPSKRKKP RWDTSSFSNN  300
INFQQPNSSR SSSIEEPDPE AIAQMKEMIY RAAAFRPVNF GLDGAEKPKR KNVRISSDPQ  360
TVAARHRRER ISERIRVLQK LVPGGSKMDT ASMLDEAANY LKFLRSQVKA LECLGNKVDA  420
MNCPPTSIAF SFNPSFPVQT SLSHIHHSQG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G143000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135604.10.0hypothetical protein PHAVU_010G143000g
TrEMBLV7ASJ70.0V7ASJ7_PHAVU; Uncharacterized protein
STRINGXP_007135604.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-68bHLH family protein