PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 204aa MW: 21944.3 Da PI: 8.486

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G141400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.1	5.1e-40	17	77	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk k+s Phvul.010G141400.1 17 EQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRS 77 57899***************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	8	66	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	19	75	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	21	75	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	23	59	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MQDPTAFAGL KHPQFPEQEQ LKCPRCDSSN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGA 60 LRNIPVGGGS RKTTKRSSTS KRSSAPPSSA VSEADPTRIC TNPVEQDPRV VNIGGTFSSL 120 LASSGHFGTL LEGLNPTGSD LKMGEFGEGV SSDLGLNSNP GLQLQSNGSS EGFLGMQNGE 180 STCWNGAHGW SDLAIYTPRP SFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G141400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007135581.1	1e-150	hypothetical protein PHAVU_010G141400g
Swissprot	O82155	1e-44	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	V7AQH8	1e-149	V7AQH8_PHAVU; Uncharacterized protein
STRING	XP_007135581.1	1e-149	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-37	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Phvul.010G141400.1
Entrez Gene	18618413

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]