PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G138200.1
Common NamePHAVU_010G138200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 501aa    MW: 54899.3 Da    PI: 8.9053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G138200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0588110123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C++C+k F r  nL+ H r H
  Phvul.010G138200.1  88 FICEICNKGFQRDQNLQLHRRGH 110
                         89*******************88 PP
2zf-C2H212.10.00059164186123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H +t+
  Phvul.010G138200.1 164 WKCDKCSKKYAVQSDWKAHSKTC 186
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-687110No hitNo description
PROSITE profilePS5015710.84588110IPR007087Zinc finger, C2H2
PfamPF121716.0E-588110IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02288110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355240129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.19E-6159184No hitNo description
SMARTSM00355150164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEMKGFVLKQ QQAVEENMSN LTSASGEASA SSGNRTEIGT NYPQQQYLPP PPTQTQPPKK  60
KRNLPGNPDP DAEVIALSPK SLLATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
SKEVKKKVYV CPEASCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RTNNQQPLPP QPSSSHHHHN  240
HMSLQTQFNP QNLHAFSMKK EQQSLNVRPE VPPWMAPSIM FSPPPHPENP NPSLGPTLSA  300
YQTVPSASPH MSATALLQKA AQMGATISRS GSSPAMARAH HHPHMTSSAD SATPHFGFNL  360
SSREDTTTTT TSTTTAKTTT VGLLSSSSPL GNKAAATAPS LLHDVINSFS SPSAFQGTPF  420
EDAFGGIQSS KKLDDDDDDN DHSLYLHDTF SKTSGAAGNE GLTRDFLGLR PLSHTDILTI  480
AGIGNCIHHH QNQSQNPWQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35160221364Zinc finger protein JACKDAW
5b3h_F1e-35160221364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G138200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135542.10.0hypothetical protein PHAVU_010G138200g
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV7ATK00.0V7ATK0_PHAVU; Uncharacterized protein
STRINGXP_007135542.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]