PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G136100.1
Common NamePHAVU_010G136100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 290aa    MW: 31764.9 Da    PI: 10.089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G136100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
  Phvul.010G136100.1  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56
                        79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.457162IPR017930Myb domain
SuperFamilySSF466895.11E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-15456IPR009057Homeodomain-like
SMARTSM007171.1E-8459IPR001005SANT/Myb domain
PfamPF002495.0E-10556IPR001005SANT/Myb domain
CDDcd116601.16E-21656No hitNo description
SMARTSM005266.6E-17119184IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-17121201IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-16121197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150427.184121189IPR005818Linker histone H1/H5, domain H15
PfamPF005383.5E-12123182IPR005818Linker histone H1/H5, domain H15
CDDcd000733.24E-11123207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN  60
GSQGSKDKPR IPKLKALPAP PSATTSSTTT ATSQNAAPVP QNRPSDVAVP DSSPNDQDVK  120
NPPRYNAMVF EALSALKDNN GSDLNAIVTF IEQKHQVPQN FRRALSTRLR RLVSQGKLEK  180
VQNCYKIKKD VSSGTKSPPP KPKDVRPLQL QPQRQPPTSV FTASNATVKE AADTAAYRVA  240
DAESKSYLAA EAIKEAEKIS LLVEHSDSML QLAKDIYEQC SRGEIILLA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G136100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135518.10.0hypothetical protein PHAVU_010G136100g
TrEMBLV7APC80.0V7APC8_PHAVU; Uncharacterized protein
STRINGXP_007135518.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.24e-62MYB_related family protein