PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G131400.1
Common NamePHAVU_010G131400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 659aa    MW: 72985.8 Da    PI: 6.1905
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G131400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-08543591348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Phvul.010G131400.1 543 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 591
                         7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948536595IPR017930Myb domain
SuperFamilySSF466891.22E-14538596IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-11538594IPR009057Homeodomain-like
SMARTSM007178.8E-8540593IPR001005SANT/Myb domain
CDDcd116608.52E-19542592No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
METVVGIEDN DDGKFEDSGL DRSSSALSSP KQISNPIVYK LVRVEGDGRL VPATDDEVME  60
VGDFLEYENS EMHVVADTGQ SLECISIERS SSGKLRLECS EGSAEADLGK LNAKLQYIEQ  120
ILQKVKEEEK QRISCGSPVH SHVNVDSQCS ADKCPVMDGK VQSETPYQDN PSIASSLNYT  180
HSNQSGSMDQ CSRPSEGVIE SGSSASAIHS NLKPDLSMSD GEICLDKLSI RELHELFKVT  240
FGRETTVKDK QWLKRRIAMS LTNSCDVSAT NFIIKDNQIV RKFVEESSGN MNISSLISSE  300
NMTEEEDINL KDSSAVNACG IDDNQVISEI RLRNQNTEYG LEDENNETEQ RAAKRIRRPT  360
KRYIEELSEN ESREQNPRLP ISNKSMGLGQ VSSTSYVRPG RNTFSEVRTY GMRFDSLGGS  420
DVQIPCVSLI RRSRPRKDMA SLMKFHPTAT SETAKLSNKL IEHSSDAVGE IPDKVFKPRM  480
PAKFHQSPSS EPEKEKQCPV VGTIEPWQEL RPKRADLPGH TSDDNIVTVP TAKGGMRRKH  540
HRAWTLVEVI KLVEGVSRCG AGRWSEIKRL SFASYSYRTS VDLKDKWRNL LKASFAMTPA  600
PADEGINSRK HGTAPIPEKI LLRVRELAEM NSQVPPNISS NKVAAGAGSV HEGRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430436RRSRPRK
2430437RRSRPRKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G131400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135460.10.0hypothetical protein PHAVU_010G131400g
TrEMBLV7APE50.0V7APE5_PHAVU; Uncharacterized protein
STRINGXP_007135460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-122TRF-like 6