PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G126400.1
Common NamePHAVU_010G126400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 376aa    MW: 40737.4 Da    PI: 10.3236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G126400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.79.7e-1668154186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+    +   ++s++p+fd+l+
  Phvul.010G126400.1  68 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsgreDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAG---ATSKWPFFDRLD 154
                         7*************************************854334444556679*****************99986...6779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-2666156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDDDEEIQSH PSPASGSPLS SPRANGRITV TVAAPAPSNS LALALPIQQP AKGNGGGGGG  60
GGGGREDCWS EGATAVLIDA WGERYLELSR GNLKQKHWKE VADIVSGRED YTKAPKTDIQ  120
CKNRIDTVKK KYKSEKAKIA AGATSKWPFF DRLDKLIGPS AKIPGAGGSS GTAGTSAAGN  180
SILQPQKVPL GIPVGIRDGV NQYHRPQRPA QQQQQQPVPL KNQKIQFRRR DPPLESDSDE  240
RGASSPASSD SFPPESFERK RPRVMSSNAG KGSEGRRKAK GWGSAVRELT QAILKFGEAY  300
EHAESSKLQQ VVEMEKQRMK FAKDLELQRM QFFMKTQLEI SQLKLGRKGA NPSNNHHSTN  360
INNNNNNHNN NSDSE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G126400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135401.10.0hypothetical protein PHAVU_010G126400g
SwissprotQ9LJG81e-105ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLV7APZ60.0V7APZ6_PHAVU; Uncharacterized protein
STRINGXP_007135401.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.15e-48sequence-specific DNA binding transcription factors