PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G121100.1
Common NamePHAVU_010G121100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 478aa    MW: 54223.9 Da    PI: 6.2519
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G121100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46111401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+GfrF+Ptdeelv++yLk+k+ g+++++ ++i+e+d++kvePwd p k  +k++e +w+fFs+ d ky+++kr nr+t++g+Wk+tg+d
  Phvul.010G121100.1  11 LPVGFRFRPTDEELVNHYLKHKLLGDDFSV-QFIPEIDLCKVEPWDVPaKsIFKSDELQWFFFSSVDYKYSNSKRVNRTTEHGFWKSTGND 100
                         79****************************.89***************6434555666********************************* PP

                 NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++++  +++++g+kktLvf+kgr p g++t+Wv+hey++
  Phvul.010G121100.1 101 RNIKTGgSKNVIGTKKTLVFHKGRVPGGQRTNWVIHEYHA 140
                         ****9856677***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-538158IPR003441NAC domain
PROSITE profilePS5100551.71711158IPR003441NAC domain
PfamPF023654.2E-2512139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEDIISILDH LPVGFRFRPT DEELVNHYLK HKLLGDDFSV QFIPEIDLCK VEPWDVPAKS  60
IFKSDELQWF FFSSVDYKYS NSKRVNRTTE HGFWKSTGND RNIKTGGSKN VIGTKKTLVF  120
HKGRVPGGQR TNWVIHEYHA LASRESQKTY VLCRLMKKFE NKNEGRIDAP NFSGGEPSTS  180
MVSDYGNQAD ILPRMIVDPI FPEEIFFSPV QQPPVGIEVE GFFPNSPTRN ACFGNESINM  240
QIPFGVTDDE DEFLNSILVD NEEFVINEER RDCFVNRSTQ PKSLRRVYYA SSDTDAEVVS  300
NLHGNICSGE FSVRGGMSSL ASNHEAHKEK KESIIQDDFW AVETSSCDST ADEPVETTRL  360
ENRYNLRPDN FILQKTVAGR PQTQKKVSNN AVSHIEARKE LVTVKSEKDQ KSTQNTSSRG  420
ILKIRSHQSS NVNSKSSFFY METTSSNQNL FPRSVYLVNV VIGILLLIVI SWDVLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-421115820168NAC domain-containing protein 19
3swm_B8e-421115820168NAC domain-containing protein 19
3swm_C8e-421115820168NAC domain-containing protein 19
3swm_D8e-421115820168NAC domain-containing protein 19
3swp_A8e-421115820168NAC domain-containing protein 19
3swp_B8e-421115820168NAC domain-containing protein 19
3swp_C8e-421115820168NAC domain-containing protein 19
3swp_D8e-421115820168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G121100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150428e-88AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135341.10.0hypothetical protein PHAVU_010G121100g
TrEMBLV7APU10.0V7APU1_PHAVU; Uncharacterized protein
STRINGXP_007135341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-55NAC transcription factor-like 9