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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G120700.1 | ||||||||
Common Name | PHAVU_010G120700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 480aa MW: 53924.6 Da PI: 4.6137 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.2 | 9.1e-38 | 4 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 +Gf F+Pt+ elv++yLk k+ +++ +v++e+d+++v Pw+ p + k + +++ew+fFs+ d ky+++kr nr tksg+Wk t Phvul.010G120700.1 4 VGFGFRPTEVELVDFYLKLKLLDDPRA--HVMTEIDLCNVAPWEVPvMlaK--SvipfSDREWFFFSPVDFKYSNSKRVNRRTKSGFWKPT 90 7*********************99944..58***************43441..25566999****************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+++ + +++++g+kktLvf gra+kg+k++Wv+hey++ Phvul.010G120700.1 91 GKDRKIRTWdTTTVIGTKKTLVFCIGRASKGVKAKWVIHEYHA 133 ******99856778***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.75 | 2 | 154 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-42 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-20 | 4 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MKIVGFGFRP TEVELVDFYL KLKLLDDPRA HVMTEIDLCN VAPWEVPVML AKSVIPFSDR 60 EWFFFSPVDF KYSNSKRVNR RTKSGFWKPT GKDRKIRTWD TTTVIGTKKT LVFCIGRASK 120 GVKAKWVIHE YHALNALTFH KNQKDFVLCR LIKKPGKTTE GGTDALICDE GESSRSVVSD 180 CENQAIAGLP SGGTYTGMET VCEATHQADK SISPKEPPLI DIEQDEASSS NFASINAYFR 240 NENNIMQIPS ETTQIPSETK QIPSETIQME SETKQIPSSE TIPKDVLNSL NSFLFNEVPC 300 EVTETLSEDM QGVLTETMQA MQALLSEAKQ APLFEATQPP YDTTQISSET TQTPYMQVPF 360 ETPQTPSETS SFNHSTQSKS LKRAYCESPY IDAEVFPKLD ANIGDISIMY TKYLNSDEYY 420 SSKRFKTSYD VALGDTCLLF SNQEANQEKQ ESIFQDDFWG EETSSCDSTT SKPLEINCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-28 | 5 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-28 | 5 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-28 | 5 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-28 | 5 | 154 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-28 | 5 | 154 | 23 | 168 | NAC domain-containing protein 19 |
4dul_A | 7e-28 | 5 | 154 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 7e-28 | 5 | 154 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G120700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007135335.1 | 0.0 | hypothetical protein PHAVU_010G120700g | ||||
TrEMBL | V7AP28 | 0.0 | V7AP28_PHAVU; Uncharacterized protein | ||||
STRING | XP_007135335.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 3e-39 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G120700.1 |
Entrez Gene | 18618200 |