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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.010G118700.1 |
Common Name | PHAVU_010G118700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 423aa MW: 47209.1 Da PI: 6.5114 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.010G118700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 168.9 | 1.7e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+
Phvul.010G118700.1 15 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQEKCKIgttPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 104
69****************************.9***************964444222455******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk ++s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl
Phvul.010G118700.1 105 DKVIYS-NGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143
******.999****************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 423 aa
Download sequence Send
to blast |
MPENMSISVN GQSQVPPGFR FHPTEEELLQ YYLRKKVSYE KIDLDVIRDV DLNKLEPWDI 60 QEKCKIGTTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NGKRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDNTTSD TNIVSNVMGD GGQEEGWVVC RIFKKKNNLK 180 TLDSPLGSGE GRRSQLFESC DEGALEQILQ QMGRGCKEES SYEGNYSYGR LGRGYETGVN 240 NDRFMKLPSL ESPKSRSMES QQNNNNNSNN GDNNNEQNNN GYHPIIPVDM GTDNEGSFAT 300 HQVSGGDPNM VHPMEASSGG GGLTNWAALD RLVASQLNGQ TEASRHFACF NDPTIAYCTT 360 HHDLPLPTLR SSSNPSSTST LTRPSAASAY INPAHDFTSE IDLWNFTRST SEPLCHVSNT 420 SL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Publications
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- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]
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