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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.010G117900.1 |
Common Name | PHAVU_010G117900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
bHLH |
Protein Properties |
Length: 465aa MW: 51937.7 Da PI: 6.5912 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.010G117900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 38.3 | 2.4e-12 | 284 | 330 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L
Phvul.010G117900.1 284 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVTYINEL 330
5899***********************6.....4***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MEELIMSPSS SSSLVSQPQE NPIPTPSLQQ KLQFLLQSQP DWWVYAIFWQ ASHDDNGNLY 60 LSFGEGHFQG TKETSPKFPT PISTKKFTKT PTTENINDAE WFYVMSLTRT FTVTNSSSST 120 PPTPSSLLGK SFALGSVLWL NNKQELQFYK CDRSNEAHLH GIQTLISIPT QDGVVEMGSY 180 DSIKQNWNLV QHVKSLFQPL PDPLPVQVLN DNTISFADIG IVAGIQETKK RKQAQTPPNN 240 KKDIYVDSEH SDSDCPMLPT TTTPTASEPK KRGRKPVIGR ETPMNHVEAE RQRREKLNHR 300 FYALRAVVPN VSRMDKASLL SDAVTYINEL KAKIEYLESQ QQREGNKRVK TEMMDTMDNQ 360 STTTTTTSTI VDQSRPGAGG PCPFGLEIDV KIMGPDAMVR VQSENANHPG ARLMGALRDL 420 EFQVHHASMS CVNDLMLQDV VINVPNGMRS EEGLKSAILM RLDQ*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_B | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_E | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_F | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_G | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_I | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_M | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
5gnj_N | 2e-26 | 278 | 358 | 1 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |