PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G114800.1
Common NamePHAVU_010G114800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 631aa    MW: 69071.7 Da    PI: 6.9111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G114800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13464510455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Phvul.010G114800.1 464 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 510
                         799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-5251241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.48E-15463514No hitNo description
SuperFamilySSF474592.49E-18463523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18464523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-17466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MKIEVGLGGV WNEEEKATVV EVLGRGAFDY LVANSVSNEN LLMAFGSGEN LQNKLSDLVE  60
RPNASNFSWN YAIFWQISQS KFGDWVLGWG DGCCREPREG EEGGEVRGKG RGVVADDEKV  120
QGMRKRVLQK LHMTFGGSDE DNYAFGLDRV TDTEMFFLAS MYFSFPRGLG GPGKCFASGK  180
HLWLSDVFKS SFDYCVRSFL AKSAGIQTVV LVPTDMGVVE MGSVRMVGES FELLQALKSV  240
FSSQASLVPP RVKPIAPLDL VSEKREENAD APFSSVPIGD KDNNNSSNGN NRVEGIGVPK  300
IFGQDLNSVT QFREKLAVRK MEERPRAWGG HPNGNTIGFP NGIHTSNWGT GQVVRQVAPP  360
EMHARRLASS GTLSVPVPEL ANGTRHDFVH NNYQQQRPVQ MQIDFSGATS RGATSRASGR  420
SIIAESEISD VEASCKEERV SVADDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  480
YALRAVVPNI SKMDKASLLG DAIAYINELQ AKLKTMESER ERFGSTSMDG SAVEANARAE  540
NHSNGAPDVD VQAAQDGVVV KVSCPIDVHP VSKVIQTFKE AEIGVVDSKL TAANDTVFHT  600
FVVKSQGPDQ LTKEKLIALF SKASNPIQTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-30458520264Transcription factor MYC2
5gnj_B4e-30458520264Transcription factor MYC2
5gnj_E4e-30458520264Transcription factor MYC2
5gnj_F4e-30458520264Transcription factor MYC2
5gnj_G4e-30458520264Transcription factor MYC2
5gnj_I4e-30458520264Transcription factor MYC2
5gnj_M4e-30458520264Transcription factor MYC2
5gnj_N4e-30458520264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445453RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G114800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135266.10.0hypothetical protein PHAVU_010G114800g
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLV7APM60.0V7APM6_PHAVU; Uncharacterized protein
STRINGXP_007135266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-165bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]