PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G111900.1
Common NamePHAVU_010G111900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 370aa    MW: 41278.3 Da    PI: 4.9118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G111900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY888.3e-28136196259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+edp v eitY g+H+++
  Phvul.010G111900.1 136 EDGYSWRKYGQKDILGAKFPRAYYRCTYRniqGCLATKQVQKSDEDPMVNEITYIGRHTCT 196
                         7***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-27120197IPR003657WRKY domain
PROSITE profilePS5081121.528130193IPR003657WRKY domain
SuperFamilySSF1182901.31E-24133197IPR003657WRKY domain
SMARTSM007741.3E-38135197IPR003657WRKY domain
PfamPF031061.8E-25136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEESTKCEQV GVIGELMLGE ELTKKLYSQL FPSSSVSSSS SSSTSSRDTN EVLIEKIIST  60
MEKAIAMVNC MANVGESKAK NGSMMDSHCS FINGSPKSEV MEPEVEHRDV SKKRKTMPRR  120
RDQVKVCLET AEGTKEDGYS WRKYGQKDIL GAKFPRAYYR CTYRNIQGCL ATKQVQKSDE  180
DPMVNEITYI GRHTCTQASH LSKAVVSPSK TKTVIEENQH QTNQKNQPQQ EKIEHPPEKI  240
FSFGSQVEVK VEDLDHKQGI FPSFCFSSPS IGSENEDNSN IFPYSMIENN LMESFSPAFI  300
SPTTSESDMF CHWESTGLGQ SVHSSTSDIT DIVSTPTSVT NSPIMDFDFL LDKIDFDIDF  360
PMATTELCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-191371931874Disease resistance protein RRS1
5w3x_D9e-191371931874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G111900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312390.0KT031239.1 Glycine max clone HN_CCL_173 WRKY transcription factor (Glyma16g02960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135232.10.0hypothetical protein PHAVU_010G111900g
TrEMBLV7ASP90.0V7ASP9_PHAVU; Uncharacterized protein
STRINGXP_007135232.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-41WRKY family protein