PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G070200.1
Common NamePHAVU_010G070200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 907aa    MW: 100202 Da    PI: 6.8557
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G070200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.6e-18321420198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Phvul.010G070200.1 321 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 409
                         89**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Phvul.010G070200.1 410 PEGKLIMGFRK 420
                         77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-29313429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.15E-18318421IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-21319420No hitNo description
PROSITE profilePS5086311.166321422IPR003340B3 DNA binding domain
PfamPF023621.6E-15321420IPR003340B3 DNA binding domain
SMARTSM010191.2E-19321421IPR003340B3 DNA binding domain
PROSITE profilePS5105013.35586636IPR011124Zinc finger, CW-type
PfamPF074962.1E-10591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MESKNCMNVA CATLTTIRWR KGWALRSGEF ADLCDKCGSA YEQSTYCDMF HPNDSGWRKC  60
TSCDKRLHCG CIASMSQLEL LDTGGVSCIS CARNSGLQPI ASNEKPNGSG TSKVIDASAQ  120
QCTTLANQLN VRGMQGGHYA ENDGLRCWFK PHKVETDGLS TEMKPEVLPS VGELGSTLIS  180
QFHFESNGSS KASKAESCKV DSEMRDIYDS LAQTNLSMTL ATPLGNSNPF HNSVVDEREQ  240
SKASSLLLGS RSRHLLPKPP RSTSGTGLEV NAGMISQIRV ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK  420
ATNSTAVQET LPSNMPNGSH SSETSYSGVY ENLPVLSGYS GLLQSQKGCS ETHLNVLSKK  480
WNSAGGDMNW HNIDMPESRK REGLPLPPLL VPEKKRTRNI GSKSKRMLID SQDAMELKLT  540
WEEAQDLLRP PPTVKPSIVM IEDQVFEAYE EPPVFGKRSI FVVRSAGVNE QWTQCDSCSK  600
WRKLPVDVLI PPKWTCVENL WDQSRSSCAA PNELNPRELD NLLRLNKEFK KQRLAASQRP  660
ALDKESSGLD ALANAAILGD DASDSGRTPV VTTTKHPRHR PGCSCIVCIQ PPSGKGKHKP  720
TCTCNVCMTV KRRFKTLMMR KKKRQSEREA EIAQRNQLAW GTKEESEVDS TSRHLTPVDG  780
LENEVRAPIE LEPRTEDHVA EAGKGQLDLN CQPDREEAQA GPNNVSMTTL LEEANLPLET  840
YLKQNGLTSL ISEQQTNSAS NVQAQTTNES EGRHNEDCGT PSVIHEQDSS HEENSGQDKD  900
QNNSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-692994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741KRRFKTLMMRKK
2730743KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G070200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134718.10.0hypothetical protein PHAVU_010G070200g
RefseqXP_007134719.10.0hypothetical protein PHAVU_010G070200g
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLV7AQ410.0V7AQ41_PHAVU; Uncharacterized protein
STRINGXP_007134718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]