PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 34158.2 Da PI: 7.505

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.010G052200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.8e-20	142	196	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k Phvul.010G052200.1 142 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTK 196 788899***********************************************98 PP
2	HD-ZIP_I/II	126.3	1.3e-40	142	231	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Phvul.010G052200.1 142 RKKLRLSKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 231 69*************************************************************************************9.44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	9.8E-25	1	113	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	2.0E-19	116	199	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-20	126	199	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.864	138	198	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	140	202	IPR001356	Homeobox domain
CDD	cd00086	2.55E-16	142	199	No hit	No description
Pfam	PF00046	3.4E-17	142	196	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	173	196	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.7E-12	198	232	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.8E-27	198	241	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGEKDDGLGL RLSLRWGEND DNNMNQQHPF NMHKPPQPVP NQRTSFNNLF HFHGASHVTN 60 RNSEPPPFFF GIDVNLPPPP TPTPSVVPCE EDNLVSSQNS AVSSISGKRS EREENERGSC 120 SHGSEDEDGG GFGGEGDGDM SRKKLRLSKE QALVLEETFK EHNTLNPKQK QALAKQLNLS 180 PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRA LKFSPQLYMH 240 MNPPTTLTMC PSCERVAVSS ASSSSSAAMP SVPPPANHNP LGPTIQRPVP VNPWAAMSIQ 300 RPCRN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	146	SRKKLRL
2	190	198	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.010G052200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	1e-120	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007134496.1	0.0	hypothetical protein PHAVU_010G052200g
Swissprot	P46602	2e-89	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	V7AMJ1	0.0	V7AMJ1_PHAVU; Uncharacterized protein
STRING	XP_007134496.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1239	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	8e-76	homeobox-leucine zipper protein 4

Link Out ? help Back to Top
Phytozome	Phvul.010G052200.1
Entrez Gene	18617485

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]