PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.010G043200.1 | ||||||||
Common Name | PHAVU_010G043200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26835.5 Da PI: 9.0424 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.1 | 1.6e-13 | 66 | 113 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR++i + + eL ++P + kKl+K +i k+++Y+k+Lq Phvul.010G043200.1 66 QQHIMAERKRREKISTLLVELSAMVPGL-----KKLDKLSIIGKTIDYVKYLQ 113 5799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-16 | 60 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.218 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-11 | 66 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-18 | 67 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.39E-12 | 68 | 117 | No hit | No description |
SMART | SM00353 | 3.9E-13 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
DFANSSSNNN GSCLERNTQH ANSNSEKNQV VSSCNLSFED STVVSNVPDK SFHEKPLKGR 60 SSSLSQQHIM AERKRREKIS TLLVELSAMV PGLKKLDKLS IIGKTIDYVK YLQNRVKDLQ 120 EQHSKMESID CCRNNKSNVK ISQNSNNGLD DRLTFPKVDA SVSGKDVIIR VTCEKREHIV 180 TKLLSMLASH NLSVVCSSVL PFGTSTLNIS IIAKAQHFGM AIDDLVKNLS EDLLKLYNLQ 240 Q* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | ERKRRE |
2 | 72 | 77 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.010G043200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007134383.1 | 1e-176 | hypothetical protein PHAVU_010G043200g, partial | ||||
TrEMBL | V7ALB3 | 1e-174 | V7ALB3_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007134383.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18248 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.1 | 3e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.010G043200.1 |
Entrez Gene | 18617392 |