PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G042700.1
Common NamePHAVU_010G042700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 370aa    MW: 41603.6 Da    PI: 6.4579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G042700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10190236455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + ErrRR+++ ++f  L   +P +     kK +Ka iL++A+ Y+k+L+
  Phvul.010G042700.1 190 DHIMTERRRRQELTERFIALSATIPGL-----KKTDKAYILREAMIYMKQLE 236
                         6999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.745186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-14190250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-8191236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-13191256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-8191239No hitNo description
SMARTSM003538.5E-9192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEEDSWESWI SSLEMGDEDN FIGHSHIKSL DEDKFVLEPL NFSFHNSSTN NNDNDNNSKK  60
VFSMGSSCLS YEEDASFDER HGKMLKSNSS SSIISQDVVA YKNAASSSSS SSAPSSSSSF  120
ILSFENSTMK PSSLHHRPND DDDHGDLHRY FGGDALCSSV LSSESEHVIT KPKAKQGDNK  180
KYRSSSEIQD HIMTERRRRQ ELTERFIALS ATIPGLKKTD KAYILREAMI YMKQLEERVI  240
ELENENKRKN TDSRILIKKY SQVCSREEEG TSCDETKSHN ISTPPLPQVE ARVLEKEVLI  300
GIHCHKQKDI VLKIMALLQN HHLSLASSSV LPFGTSTLKV TIIAQMEEKY CMTVNNLVKS  360
LKQALLKIT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G042700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150428e-72AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134377.10.0hypothetical protein PHAVU_010G042700g
TrEMBLV7AQ820.0V7AQ82_PHAVU; Uncharacterized protein
STRINGXP_007134377.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14989811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-34bHLH family protein