PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G024800.1
Common NamePHAVU_010G024800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 586aa    MW: 64018.2 Da    PI: 6.6578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G024800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09387434455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Phvul.010G024800.1 387 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 434
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.37E-10381438No hitNo description
SuperFamilySSF474598.11E-17381451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663383433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16383451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6387434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10389439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MENQFFLNDG VSQTQHHPLH FQPSPPPPSS LPSWQSLSPT MGIQPTLLNS ASDQTQDCFY  60
NPSWDKSADH HGLHFDSSEL SSMVSSPAAS SNPNSNSNMS NENFIIRELV GRLGAIGSSD  120
EIPHHSPHPL VVASSYMNNG SISPNTSCYT TPLSSPPKVK TVQSLVNERL ANLGGKSMTL  180
NSSVAEFSAD PGFAERAAKF SCFGSRSFNG RNVQLGVNNG ELAQRSAPVV ENGGKLSRIS  240
SSPLLMTLGS QMGTQENKNS AIQDQEKMEV TNSQEESTIS EQTPNGEIGM KIHQDMTNSR  300
KRKASSKGKT RETSNSINPS KGVEVNEDSN SKRTKPNDGE GNEKGPVKVE EESKAVEEKQ  360
NKSNSKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA  420
LMLDEIINYV QSLQRQVEFL SMKLASVNTR MDLGIENLVS KDVFQSNNSL ATHQNPIFPL  480
DSSAQAFYGH QPQQNPVIHN NIPNRTVTHC SVDPLDTSLC QNLALQLPPL NGFSEVGSQF  540
PLTFCEDDLH TIVQMGFGQT ANWKTPIQSP SFNGSNNVPQ MKVEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G024800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134164.10.0hypothetical protein PHAVU_010G024800g
TrEMBLV7ANK10.0V7ANK1_PHAVU; Uncharacterized protein
STRINGXP_007134164.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-100bHLH family protein