PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G011600.1
Common NamePHAVU_010G011600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 694aa    MW: 77184.6 Da    PI: 6.0072
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G011600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24127227198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   +
  Phvul.010G011600.1 127 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--R 215
                         99****************************977777888*************************************************..3 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+v+r
  Phvul.010G011600.1 216 GDNGELRVGVRR 227
                         489999****98 PP
2Auxin_resp94.61.5e-31253334183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t++ F v+Y+Pr+  s+F++ v+++++a+++k+ vGmRfkm+fe++ds+e  +r+sGt+vg++d++p +W+nSkWrsLk
  Phvul.010G011600.1 253 ASHAVATQTLFVVYYKPRT--SQFIIGVNRYLEAVSTKFGVGMRFKMRFEGDDSAEtdKRFSGTIVGIEDISP-HWENSKWRSLK 334
                         789***************6..9********************************9833577**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-39118256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-40118242IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-21125227No hitNo description
PROSITE profilePS5086312.28127229IPR003340B3 DNA binding domain
PfamPF023622.8E-22127227IPR003340B3 DNA binding domain
SMARTSM010193.2E-22127229IPR003340B3 DNA binding domain
PfamPF065072.9E-29253334IPR010525Auxin response factor
PfamPF023094.9E-13560667IPR033389AUX/IAA domain
PROSITE profilePS5174524.455582663IPR000270PB1 domain
SuperFamilySSF542778.5E-13584658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MLSRASNVSA EVVGWGEGED ELYEQLWKAC AGPLVDVPRA GQRVFYFPQG HMEQLEASTN  60
QELNQRIPLL QLPTKILCRV VNVHLLAEQE TDEVYAQITL VPESNQDEPT SADTCTAEAP  120
RAPAHSFCKV LTASDTSTHG GFSVLRKHAT ECLPALDMSQ PTPTQELVAK DLHGYEWRFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDT FVFLRGDNGE LRVGVRRLAR QASSMPSSVI  240
SSQSMHLGVL ATASHAVATQ TLFVVYYKPR TSQFIIGVNR YLEAVSTKFG VGMRFKMRFE  300
GDDSAETDKR FSGTIVGIED ISPHWENSKW RSLKVQWDEL AAVPRPERVS PWEIEPFIAS  360
ASTPSVQPTI VKTKRPRPSS EVPDVDTTSA ASVFWDTDLP QPDTTQINVL AESKQNDKTG  420
SWHHMQTDMN SKSNSNNTML RNQTEGSWLS SPHSSCPSHL FQDTTDDSKS VSGWPVSKPH  480
SSRLSNEHVL DQVDKENKVE TAASYRLFGI DLIDHSRNSP AVEKASPHAV NVAKVTTEGC  540
TSTLSQTDAG HMSEVPNSSS KERKQEQQQV SPKETQSKQV CRSRTKVQMQ GVAVGRAVDL  600
TILDGYDKLI NELEEMFDIK GQLQYRNKWE IVFTDDEGDM MLVGDDPWPE FCSMVRRIFI  660
CSSQDVKKMC CGSKLPISSV EDGTVISSET TET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16753573355Auxin response factor 1
4ldw_A1e-16753573355Auxin response factor 1
4ldw_B1e-16753573355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373377KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G011600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134010.10.0hypothetical protein PHAVU_010G011600g
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLV7AKC70.0V7AKC7_PHAVU; Auxin response factor
STRINGXP_007134010.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9