PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G253800.1
Common NamePHAVU_009G253800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 759aa    MW: 86599.4 Da    PI: 6.7233
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G253800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.2e-2059152190
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 
                         +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ HnH
  Phvul.009G253800.1  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFRNIHNH 149
                         6***************9998874556679*******************9*******************98887676789************ PP

                FAR1  88 ela 90 
                         el 
  Phvul.009G253800.1 150 ELL 152
                         *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1759152IPR004330FAR1 DNA binding domain
PfamPF105518.5E-23275367IPR018289MULE transposase domain
PROSITE profilePS509669.804554587IPR007527Zinc finger, SWIM-type
PfamPF044346.8E-7559585IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-6562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSEGTSLVLE SSENGTDLSQ DDIDTIEETA EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGFP QIKPSDDGKV QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFRNIHNHE LLKSNEVRLL PAYCPISPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENN  240
NFKYEFKIDS NNRLEHIAWS YSSSIQSYET FGDAVVFDTT YRVDAYDMLL GFWLGVDNNG  300
MTCFFSCALL RDENILSFSW ALKAFLGFMK GKAPQTILTD HNTWLKEAIA VELPETKHAF  360
CIWHILSKFS DWFSLLLGSQ YDEWKAEFHR LYNLELVEDF EEGWRQMVDK YGLHTNKHII  420
SLYSLRTFWA LPFLRRYFFA GLTSTCQSES INGFIQRFLS AQSQLDRFVE QVADIVDFND  480
RAGAKQKMQR KLQKACLKTG SPIESHAATV LTPYALNKLQ EELVLAPQYA SFLVDEGCFQ  540
VRHHSQSDGG CKVFWVPCQE HISCSCHLFE FSGILCRHVL RVLSTNNCFH VPDQYLPGRW  600
RGISSSSVNH FRGATSRDQP ERMQLLESMV STFLVESIET EERLDVACEQ ISMVLSRIKT  660
LPRSPHGVND IAFSYPSDSL ILPEVEDADG MIPGFTITNP HDSITTGKLK ERRARDGVDL  720
TRKRRQFSAP LCAQYGHDAT DCSIMATDNM SGDALGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720725TRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G253800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138969.10.0hypothetical protein PHAVU_009G253800g
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLV7B2610.0V7B261_PHAVU; Uncharacterized protein
STRINGXP_007138969.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]