PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G251600.1 | ||||||||
Common Name | PHAVU_009G251600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26209.6 Da PI: 8.7585 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.1e-20 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg+f taeeAa+a++ a+k+++g Phvul.009G251600.1 92 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFSTAEEAARAYDTAAKRIRG 141 69*******.**********72....35************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-37 | 92 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-23 | 92 | 150 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 92 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 92 | 149 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-13 | 92 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-12 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-33 | 93 | 151 | No hit | No description |
PRINTS | PR00367 | 6.1E-12 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MCGGAIISDF IGVKRGRNLP KQQLWSELDP YSDLLGFDYS SATNAATAAA TSKLPLPVIP 60 DKKVESCEKK KKSVGAAAAA AGKKSERARK NVYRGIRQRP WGKWAAEIRD PHKGVRVWLG 120 TFSTAEEAAR AYDTAAKRIR GDKAKLNFPA ATPPPSKKRC LSPDLPQQSS SASTAPPPSS 180 ASYGGDSSGG EELDLKQLEL FLGLENEQLL PNNGVEWDNG YMMDDLWMLD DVVVTNHDLV 240 Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 88 | 149 | 1 | 63 | ATERF1 |
3gcc_A | 1e-22 | 88 | 149 | 1 | 63 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G251600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138947.1 | 1e-178 | hypothetical protein PHAVU_009G251600g | ||||
TrEMBL | V7B3A9 | 1e-177 | V7B3A9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138947.1 | 1e-177 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-29 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G251600.1 |
Entrez Gene | 18621264 |