PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G240900.1 | ||||||||
Common Name | PHAVU_009G240900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 121aa MW: 13331.8 Da PI: 5.3453 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 12 | 62 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ +l+g Phvul.009G240900.1 12 KYRGVRKRP-WGKFGAEIRDPKKpT---GRQWLGTFDTAEEAARAYDRAAIELRG 62 8********.**********97644...688**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-12 | 12 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-30 | 12 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.63E-30 | 12 | 72 | No hit | No description |
SMART | SM00380 | 3.6E-35 | 12 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.604 | 12 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-22 | 12 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.6E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MEEKEKGGEE VKYRGVRKRP WGKFGAEIRD PKKPTGRQWL GTFDTAEEAA RAYDRAAIEL 60 RGGLAILNFP HASASSSTTA IGTSSSSSSS QQKEVIEFEC LDDKVLEDLL ESEVKRRNPD 120 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-30 | 7 | 105 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G240900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-103 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138830.1 | 2e-83 | hypothetical protein PHAVU_009G240900g | ||||
Swissprot | Q9LTC5 | 5e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | V7AZ43 | 4e-82 | V7AZ43_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138830.1 | 7e-83 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 2e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G240900.1 |
Entrez Gene | 18621155 |
Publications ? help Back to Top | |||
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