 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Phvul.009G233400.1 |
| Common Name | PHAVU_009G233400g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 234aa MW: 26452.5 Da PI: 9.928 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.009G233400.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.5 | 1.1e-18 | 87 | 141 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq +Le+ F+ + +++ ++++ LA+kl+L+ rqV vWFqNrRa+ k
Phvul.009G233400.1 87 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTK 141
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 114.4 | 6.9e-37 | 87 | 176 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk++l+keq+++LE+ F+ +++L+p +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eLr++
Phvul.009G233400.1 87 RKKLKLTKEQSATLEDIFKLHTTLNPAQKQALAEKLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQ 176
69*************************************************************************************975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MEDDEPCITT LSLGLGMGGH VPKKDKQKQK LPSLDLTFDI CPRREQMIHV DHQQQLHDDK 60
AKGLLCLKHP NENNSPESSN NSNNGTRKKL KLTKEQSATL EDIFKLHTTL NPAQKQALAE 120
KLNLKHRQVE VWFQNRRART KLKQTEVDCE FLKKCCEKLT DENLRLKKEL QELRAQKVGP 180
KPLYIQLSKA TTLSICSSCE KELKPKEGKK GGITDVVRNS SHKLQNSVGV KGI*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 135 | 143 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031172 | 1e-164 | KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds. |
