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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G209500.1 | ||||||||
Common Name | PHAVU_009G209500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TALE | ||||||||
Protein Properties | Length: 364aa MW: 40978.6 Da PI: 5.4338 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.5e-07 | 301 | 333 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Phvul.009G209500.1 301 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 333 59*****************************87 PP | |||||||
2 | ELK | 29.1 | 2.3e-10 | 254 | 275 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Phvul.009G209500.1 254 ELKHELKQGYKEKIVDIREEIL 275 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.8E-18 | 90 | 134 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.5E-17 | 92 | 133 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-25 | 142 | 197 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.7E-19 | 146 | 196 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 254 | 275 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 254 | 274 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.2E-7 | 254 | 275 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.612 | 274 | 337 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-10 | 276 | 341 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 276 | 340 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.97E-11 | 277 | 338 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-25 | 281 | 338 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.6E-18 | 294 | 333 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAFHDHLAHE ITFQSFTEEQ QMGQGRDMQR LLPLSGGAPT WLNGSNAATL RQQNFLHLQP 60 ESGTAQQNDD VRGGIDRNRT ESNSEPDDLA EYKADILGHP LYDQLLSAHI SCLRIATPVD 120 QLPRIDAQLQ QSQRVVDKYS SLGNGVVDDK ELDQFMTHYV ILLCAFKEQL QQHVRVHAME 180 AVMACWELEQ SLQTLTGVSP GEGTGATMSD DEEDQAESNA NIYEGSMDGA DSLSFGPLVP 240 TETERSLMER VRQELKHELK QGYKEKIVDI REEILRKRRA GKLPGDTTSL LKAWWQSHSK 300 WPYPTEEDKA RLVQETGLQL KQINNWFINQ RKRNWHTNPS SSSGSKSKRK SSGAGETSNQ 360 SFM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G209500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138444.1 | 0.0 | hypothetical protein PHAVU_009G209500g | ||||
Swissprot | P48000 | 1e-164 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | V7B0N4 | 0.0 | V7B0N4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138444.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-160 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G209500.1 |
Entrez Gene | 18620825 |
Publications ? help Back to Top | |||
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