PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G188800.1 | ||||||||
Common Name | PHAVU_009G188800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 96aa MW: 10916.6 Da PI: 9.3761 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.7e-06 | 17 | 63 | 16 | 55 |
HHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55 iN+ + +L+ llPk+ ++ +s ++i ++++ +I++Lq Phvul.009G188800.1 17 INDLMMRLQALLPKLNqrsdsrvLHTKASVSMMQIIKETCSHISMLQ 63 9*************666****98888888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.85E-6 | 16 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-5 | 17 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MSGRRNSRTS KFTESGINDL MMRLQALLPK LNQRSDSRVL HTKASVSMMQ IIKETCSHIS 60 MLQREVKEHG ERLAELVNSA YTSDVDEECL RKLHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G188800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-55 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007138199.1 | 4e-64 | hypothetical protein PHAVU_009G188800g | ||||
TrEMBL | V7B003 | 8e-63 | V7B003_PHAVU; Uncharacterized protein | ||||
STRING | XP_007138199.1 | 1e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10624 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74500.1 | 4e-11 | activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G188800.1 |
Entrez Gene | 18620614 |