PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 446aa MW: 51416.5 Da PI: 7.0561

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G177100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.4	1e-15	163	209	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++v+q+G + W+ Ia+ ++ R +kqc++rw+++l Phvul.009G177100.1 163 KGHWTIEEDGILIQLVEQYGLRKWSHIAKILP-ERIGKQCRERWHNHL 209 789***************************.***********97 PP
2	Myb_DNA-binding	52	1.6e-16	215	257	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Phvul.009G177100.1 215 KDTWNCEEDKILIEAHAKIGNK-WAEIAKRLP-GRTENSIKNHWN 257 578*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.344	158	213	IPR017930	Myb domain
SuperFamily	SSF46689	1.26E-30	161	256	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-13	162	211	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-24	164	214	IPR009057	Homeodomain-like
Pfam	PF13921	5.9E-18	166	222	No hit	No description
CDD	cd00167	3.35E-13	166	209	No hit	No description
PROSITE profile	PS51294	20.278	214	264	IPR017930	Myb domain
SMART	SM00717	4.6E-15	214	262	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-21	215	262	IPR009057	Homeodomain-like
CDD	cd00167	1.27E-11	217	260	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MDIDTLVKES FVPQPLQESC TKDMIPLGNP SSHQLLQEHF HHIDEFQFSV PSSINSTFHA 60 FHNFTFTPSS PNLDVYECKP FVMDNFLYGN SQRNIELDIM VSNQSFLPFT PQQIKHSNFA 120 LPDELSCISS MNYYKGIGVN KNHRSYPTTR RTYKVHKKSN TVKGHWTIEE DGILIQLVEQ 180 YGLRKWSHIA KILPERIGKQ CRERWHNHLR PDIKKDTWNC EEDKILIEAH AKIGNKWAEI 240 AKRLPGRTEN SIKNHWNATK RRQYSKRKCR SKYPRGTLLQ EYIKSLNLDK NPPRDYRRKS 300 CVNYATPMNI KTSTSKATAP ALPQTVFQFC ATECLAPNSD FNVVPDFLFG ENLFEEGCCI 360 DSLLDGVPCV PLENNKIFEG KMQFDGMMEG IKHCDYGGIE CVAGVNMDEN DVERDMALEM 420 LKVEVKNELD LVEMISQINN ETFYV*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MDIDTLVKES FVPQPLQESC TKDMIPLGNP SSHQLLQEHF HHIDEFQFSV PSSINSTFHA  60
FHNFTFTPSS PNLDVYECKP FVMDNFLYGN SQRNIELDIM VSNQSFLPFT PQQIKHSNFA  120
LPDELSCISS MNYYKGIGVN KNHRSYPTTR RTYKVHKKSN TVKGHWTIEE DGILIQLVEQ  180
YGLRKWSHIA KILPERIGKQ CRERWHNHLR PDIKKDTWNC EEDKILIEAH AKIGNKWAEI  240
AKRLPGRTEN SIKNHWNATK RRQYSKRKCR SKYPRGTLLQ EYIKSLNLDK NPPRDYRRKS  300
CVNYATPMNI KTSTSKATAP ALPQTVFQFC ATECLAPNSD FNVVPDFLFG ENLFEEGCCI  360
DSLLDGVPCV PLENNKIFEG KMQFDGMMEG IKHCDYGGIE CVAGVNMDEN DVERDMALEM  420
LKVEVKNELD LVEMISQINN ETFYV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-43	162	263	3	104	C-Myb DNA-Binding Domain
1msf_C	1e-43	162	263	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269\|PubMed:16214903, ECO:0000269\|PubMed:17693534, ECO:0000269\|PubMed:17937500, ECO:0000269\|PubMed:18410484, ECO:0000269\|PubMed:23093426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G177100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138059.1	0.0	hypothetical protein PHAVU_009G177100g
Swissprot	Q9S7L2	3e-87	MYB98_ARATH; Transcription factor MYB98
TrEMBL	V7AZJ9	0.0	V7AZJ9_PHAVU; Uncharacterized protein
STRING	XP_007138059.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1570	31	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-89	myb domain protein 98

Link Out ? help Back to Top
Phytozome	Phvul.009G177100.1
Entrez Gene	18620492

Publications ? help Back to Top
Mendes MA, et al. Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis. Development, 2016. 143(15): p. 2780-90 [PMID:27338615]