PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 308aa MW: 34526.1 Da PI: 10.431

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G151000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.8e-16	18	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede l+++vkq+G+ +W+ I++++ +R++k+c++rw++ Phvul.009G151000.1 18 RGHWRPSEDETLKKLVKQYGPQNWNFISEYLE-RRSGKSCRLRWYNQ 63 899***************************.**********96 PP
2	Myb_DNA-binding	43.1	9.9e-14	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++T+e++e+l+ ++k G++ W++Iar ++ g+t++ +k+ ++ + Phvul.009G151000.1 70 KKPFTEEDEERLLALHKVKGNK-WAAIARFFP-GKTDNAVKNQFHVL 114 689*****************.*****.********9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.811	13	68	IPR017930	Myb domain
SMART	SM00717	1.5E-14	17	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.74E-27	17	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-23	19	71	IPR009057	Homeodomain-like
Pfam	PF13921	1.4E-15	21	81	No hit	No description
CDD	cd00167	7.37E-14	21	62	No hit	No description
SMART	SM00717	3.2E-12	69	117	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	14.556	69	119	IPR017930	Myb domain
CDD	cd00167	1.00E-9	72	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-17	72	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGRASSSNSG ESKKGCSRGH WRPSEDETLK KLVKQYGPQN WNFISEYLER RSGKSCRLRW 60 YNQLDPNIIK KPFTEEDEER LLALHKVKGN KWAAIARFFP GKTDNAVKNQ FHVLMARRKR 120 ERLALSGDTF GHNPLINLNN MQNYKNKGMF ATYVSQKPTL WSTLGASSTI TSCFGISSVV 180 HRDSNVSSSA REKALFDLDH FSCRSPPTVG SSILGSYYSF TAPGLPSVGK VVPLPHKFSN 240 YSYDHRPIDS NKSCKTIKHA RDSSSTLCKF STTLEPLNLK QKGVSFIDFL GVGSSPNHRH 300 NSHHNVL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-27	18	118	7	107	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G151000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-53	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007137729.1	0.0	hypothetical protein PHAVU_009G151000g
TrEMBL	V7AYP5	0.0	V7AYP5_PHAVU; Uncharacterized protein
STRING	XP_007137729.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33450.1	4e-62	myb domain protein 69

Link Out ? help Back to Top
Phytozome	Phvul.009G151000.1
Entrez Gene	18620224