PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G145800.1
Common NamePHAVU_009G145800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 329aa    MW: 37449.1 Da    PI: 4.3922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G145800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.5e-11166209654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Phvul.009G145800.1 166 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 209
                         589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-15164221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9166209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-4167213No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15167226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00123254317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEHCDQDFLE ELMTLRRETW DTNPSTEENQ FFCNGWSSFD CFDQNSLPYL PNSSSSQQVP  60
QSYNEYYPFN EIYGSLLDET SPQIIDSYYS TLQTPLNTLG QEDYPLSIME EEDPGMLGEE  120
LKNLELQATC KAEPSQSSEM PVFNMGTGLE RKNRSKKLQG QPSKNLMAER RRRKRLNDRL  180
SMLRAIVPKI SKMDRTSILG DTIDYMKELL EKINNLQQEG ELDSKMAAIF KDVKPNEILV  240
RNSPKFEVER SVDTRVEICC AGKPGLLQST VNTLEALGLE IQQCVISCFN DFTMQASCSE  300
ESEQRAMLSS EDIKQALYRS AGYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G145800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969920.0BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137669.10.0hypothetical protein PHAVU_009G145800g
SwissprotQ9LSL12e-81BH093_ARATH; Transcription factor bHLH93
TrEMBLV7AYJ10.0V7AYJ1_PHAVU; Uncharacterized protein
STRINGXP_007137669.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-83beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]