PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G140600.1 | ||||||||
Common Name | PHAVU_009G140600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24013.6 Da PI: 8.7998 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.9e-42 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ Phvul.009G140600.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQ 132 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e Phvul.009G140600.1 133 AELSVVRAE 141 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.614 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.8E-42 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MSRERERFDE IGKKIKREGD VSSQMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PECQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQVQS LQAELSVVRA EILKYKLREA HMIPSSHHVA MLPSAGAVSI AAPPPPPPPP 180 PPLPPPSIPQ TSSSSSMYIH QTDPTTYTTI SSDNISYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 34 | 156 | 3 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 34 | 156 | 3 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G140600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-176 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137607.1 | 1e-161 | hypothetical protein PHAVU_009G140600g | ||||
Swissprot | Q8L5T5 | 8e-87 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | V7AZD6 | 1e-160 | V7AZD6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137607.1 | 1e-161 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-80 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G140600.1 |
Entrez Gene | 18620118 |
Publications ? help Back to Top | |||
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