PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 342aa MW: 38280.6 Da PI: 4.5221

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G137000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62	1.3e-19	104	154	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Phvul.009G137000.1 104 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIRLRG 154 59******.******82....35***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.78E-33	104	161	No hit	No description
SuperFamily	SSF54171	2.42E-21	105	162	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.591	105	162	IPR001471	AP2/ERF domain
Pfam	PF00847	9.8E-13	105	154	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-29	105	162	IPR001471	AP2/ERF domain
SMART	SM00380	7.2E-38	105	168	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	106	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.7E-10	128	144	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042991	Biological Process	transcription factor import into nucleus
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEESILCKHT VHHTVTKKLL SPKKSQTNPT TDRRIVRVSY TDPDATDSSS DDEPFPFVRQ 60 RIKRYVNQIE IETATIAAPN VLSNARKRPA AEPCRRQVKL HSGKKFRGVR QRPWGKWAAE 120 IRDPARRVRL WLGTYDTAEE AAMVYDNAAI RLRGPDALTN FVTPPLKEPP PAAAEDVSEL 180 KVGVPEEASG SMYGYDSGDD HCHHNLASPT SVLHFRSNSS EENSEKTEEV LRECQGETET 240 SLFDETGEFL ALDNLPAWDD VFNFETPEYP LVFEEEHVLD ESQMLGETLA FSSNEGFSDT 300 SSILLADSLI DFDKACPPST FCQVDDYFQD ILLASDPLVL L*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEESILCKHT VHHTVTKKLL SPKKSQTNPT TDRRIVRVSY TDPDATDSSS DDEPFPFVRQ  60
RIKRYVNQIE IETATIAAPN VLSNARKRPA AEPCRRQVKL HSGKKFRGVR QRPWGKWAAE  120
IRDPARRVRL WLGTYDTAEE AAMVYDNAAI RLRGPDALTN FVTPPLKEPP PAAAEDVSEL  180
KVGVPEEASG SMYGYDSGDD HCHHNLASPT SVLHFRSNSS EENSEKTEEV LRECQGETET  240
SLFDETGEFL ALDNLPAWDD VFNFETPEYP LVFEEEHVLD ESQMLGETLA FSSNEGFSDT  300
SSILLADSLI DFDKACPPST FCQVDDYFQD ILLASDPLVL L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-22	103	167	3	65	ATERF1
3gcc_A	1e-22	103	167	3	65	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00456	DAP	Transfer from AT4G27950	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G137000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007137563.1	0.0	hypothetical protein PHAVU_009G137000g
Swissprot	Q9SUE3	4e-54	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	V7AV72	0.0	V7AV72_PHAVU; Uncharacterized protein
STRING	XP_007137563.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF450	34	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-45	cytokinin response factor 4

Link Out ? help Back to Top
Phytozome	Phvul.009G137000.1
Entrez Gene	18620080

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]