![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.009G125900.1 | ||||||||
Common Name | PHAVU_009G125900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 32832.3 Da PI: 6.9259 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.7 | 1.9e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+ Phvul.009G125900.1 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKP 96 79**************************99.88***************7777799************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kk Lvfy g+apkg k++W+mheyrl Phvul.009G125900.1 97 IGQ--PKAVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131 *98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-62 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.115 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLASYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGQP KAVGIKKALV FYAGKAPKGD 120 KSNWIMHEYR LADVDRSVRK KNSLRLDDWV LCRIYNKKGT IEKLQPSTDV VVSRKIESPE 180 IEEKKPEILK GGGGLPPAMT DYMYFDPSDS IPKLHTDSSC SEQVVSPEFA SEVQSEPKWN 240 EWEKSLEFPY YMDTSLSNGF SQFSSNNNNN IQMSPLQDMF MYWPKPF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-80 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.009G125900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU661911 | 0.0 | EU661911.1 Glycine max NAC domain protein (NAC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137423.1 | 0.0 | hypothetical protein PHAVU_009G125900g | ||||
Swissprot | Q39013 | 1e-144 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | V7AUU2 | 0.0 | V7AUU2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137423.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-134 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.009G125900.1 |
Entrez Gene | 18619961 |