PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G110500.1
Common NamePHAVU_009G110500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92240.7 Da    PI: 6.3307
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G110500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-192078357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Phvul.009G110500.1 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 78
                        5679*****************************************************97 PP
2START171.84.3e-541643722205
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+
  Phvul.009G110500.1 164 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRTVDVLNVMSTGngGT 253
                         7899******************************************************.9999999999********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++ + p     +++vRa +lpSg+li+p+++g+s +++v+h+ l+ +++
  Phvul.009G110500.1 254 IELLYMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTLNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSV 344
                         *******************************************99988877789************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqce 205
                         +++lr+l++s++  +++t++a+l+++++
  Phvul.009G110500.1 345 PEVLRPLYESSMLLAQRTTMAALRNLRQ 372
                         ************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581579IPR001356Homeobox domain
SMARTSM003891.7E-151783IPR001356Homeobox domain
SuperFamilySSF466896.42E-171982IPR009057Homeodomain-like
CDDcd000861.26E-162080No hitNo description
PfamPF000461.5E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.0E-192278IPR009057Homeodomain-like
CDDcd146864.07E-672111No hitNo description
PROSITE profilePS5084823.109154356IPR002913START domain
CDDcd088751.25E-74158373No hitNo description
SuperFamilySSF559617.0E-35163374No hitNo description
SMARTSM002342.3E-39163373IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-19163369IPR023393START-like domain
PfamPF018522.6E-51164372IPR002913START domain
PfamPF086701.5E-51700840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MMAVSSACKD GSKVAMDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILCNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQGVNR KLTAMNKLLM EENDRLQKQV SQLVYENSFF  120
RQQTQNATLA TTDTSCESVV TSGQRHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHGCPGVAA RACGLVGLEP ARVAEILKDR LSWFRDCRTV  240
DVLNVMSTGN GGTIELLYMQ LYAPTTLAPG RDFWLLRYTS LLEDGSLVVC ERSLNNTLNG  300
PAMPPVQHFV RADMLPSGYL IRPCEGGGSI IHIVDHMVLE PWSVPEVLRP LYESSMLLAQ  360
RTTMAALRNL RQISQEVSQP SVTGWGRRPA ALRALSQRLS KGFNEAVNGF ADDGWSMLES  420
DGIDDVTLLV NSSPSKMMGA NLGYNNNGFP SVSSSVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADSSID AYSAAAIKAG PCSLPGARPG GGFGGQVILP LAHTIEHEEF MEVIKLENMG  540
YYRDDMSIPG DVFLLQLCSG VDEHAVGTSA ELVFAPIDAS FSDDAPILPS GFRIIPLDSS  600
SDAASPNRTL DLASALEVGA TANKAAGDNS GHSGSTKSVM TIAFQFAFEV HLQENIATMA  660
RQYVRSIIAS VQRVSLALSP SRFGSHNAFH LPPGTPEAQT LARWICNSYR FYLGVELLKC  720
EGSESILKSL WHHSDAVLCC SLKALPVFTF ANQAGLDMLE TTLVALQDIT LEKIFDDNGK  780
KTLCTEFPQI MQQGFMCIQG GICLSSMGRP VSYERAVAWK VLNEEESAHC ICFMFINWSF  840
V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G110500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137231.10.0hypothetical protein PHAVU_009G110500g
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLV7AVB40.0V7AVB4_PHAVU; Uncharacterized protein
STRINGXP_007137231.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]