PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G104400.1 | ||||||||
Common Name | PHAVU_009G104400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 359aa MW: 39384.5 Da PI: 8.9391 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.2 | 1.8e-54 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL +k+++++++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Phvul.009G104400.1 27 LPPGFRFHPTDEELVTCYLLNKISDSNFTG-RAITDVDLNKSEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKE 116 79*************************999.89***************99999************************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++el+g+kktLvfykgrap+gek++Wvmheyr+ Phvul.009G104400.1 117 ILNSaTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRM 154 **9878899***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-63 | 24 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.467 | 27 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-28 | 28 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MQKEKEAIIK EGTDTEMEGS LPKEETLPPG FRFHPTDEEL VTCYLLNKIS DSNFTGRAIT 60 DVDLNKSEPW ELPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEILNS 120 ATSELIGMKK TLVFYKGRAP RGEKSNWVMH EYRMHSKPTF RTTRQDEWVV CRVFKKSGGA 180 KKFPSSNHAR AVNPYSLEIG PNIMPPPLMQ LGDPSAHFLY GRNYMSSVEL GELARVLRGG 240 GSTSSVNQPM QSQLGYPTSA AAAGGGGGFT ISGLNLNLGG GGGATSTTQP IFRPMQPSSA 300 APVHTMAQVV DVNSSMMTSG SLGADVGYGS ELSNMNSHGN RFMGMEHCMD LDNYWPSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-57 | 26 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-57 | 26 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-57 | 26 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-57 | 26 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-57 | 26 | 182 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-57 | 26 | 182 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-57 | 26 | 182 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G104400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-120 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137154.1 | 0.0 | hypothetical protein PHAVU_009G104400g | ||||
TrEMBL | V7AX21 | 0.0 | V7AX21_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137154.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5073 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-106 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G104400.1 |
Entrez Gene | 18619734 |