PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G090500.1
Common NamePHAVU_009G090500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 429aa    MW: 47598.6 Da    PI: 6.0475
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G090500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073653982154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp++e++++L +++gL+ +q+ +WF N+R +
  Phvul.009G090500.1 365 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 398
                         469*****************************87 PP
2ELK28.82.8e-10319340122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Phvul.009G090500.1 319 ELKHELKQGYKEKIVDIREEIL 340
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-20154198IPR005540KNOX1
PfamPF037904.8E-18156197IPR005540KNOX1
SMARTSM012563.5E-27207262IPR005541KNOX2
PfamPF037912.6E-20211261IPR005541KNOX2
PROSITE profilePS512139.969319339IPR005539ELK domain
SMARTSM011886.1E-4319340IPR005539ELK domain
PfamPF037891.0E-6319340IPR005539ELK domain
PROSITE profilePS5007111.726339402IPR001356Homeobox domain
SuperFamilySSF466894.71E-16341404IPR009057Homeodomain-like
SMARTSM003894.7E-11341406IPR001356Homeobox domain
CDDcd000862.19E-12342403No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25346403IPR009057Homeodomain-like
PfamPF059201.2E-17359398IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAYHNPQDLP LHHFTDQQHH NQTLTHSSLL SDPTSKPPSD PHQPAPNWLN NALLRAHYTD  60
NTTTNNNNDN NNNSDTNVNA ANNGATNFLN LHTAATDSGQ WLARPILHRN QSEVIDDVAA  120
AGDSAMAGAG SGDLKSEAAA VEGGGDGLMN WQNARFKAEI LSHPLYEQLL SAHVACLRIA  180
TPVDQLPRID AQLAQSQNVV AKYSAFGQAI VGDDKELDQF LSHYVLLLCS FKEQLQQHVR  240
VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDEDEQ VDSDANLFDG GLDGPDSMGF  300
GPLIPTENER SLMERVRHEL KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSVLKAWW  360
QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HSNPSTSTVL KSKRKRSNAD  420
DNSAVHHM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395415RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G090500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136985.10.0hypothetical protein PHAVU_009G090500g
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLV7ATS50.0V7ATS5_PHAVU; Uncharacterized protein
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3