PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.009G080800.1

Common Name

PHAVU_009G080800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 557aa MW: 62792.2 Da PI: 4.5573

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G080800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	48.9	1.3e-15	455	503	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++dls +F+l+i+dAA +L+v+ +v+K+i R ++kRWP+Rk++sl Phvul.009G080800.1 455 KMTMNDLSPFFHLTIRDAADKLDVSDSVVKKISRLGNLKRWPQRKLQSL 503 689*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.333	443	524	IPR003035	RWP-RK domain
Pfam	PF02042	3.1E-15	455	503	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MDNNWNNSSD LFDNSPLISN YIEPDPALVY IFNDQPNVLP QQRNAEQNDP FVVEQDHVSF 60 TGLTIEDVST HSDNDITTGG VSKLDQGGWS MRKRKFSFMD SMIEDHPMHD KDNFPNGENM 120 SAHINLNQLR VWPPAPFDID IDTSFDPFLH NLIDRDISIF DLSNDELVSP SLQQNALPQH 180 QQQVPQNALS KQQNALPQLL HTLPQSQNVY QFGVEQIHVP ILNPTFQEQS LHVNCNFTTG 240 GEVPNIDVGN QSMAEHPLLR HGILNEEDVI AIDHWPSSSK LLSCSCCQIL RQIIHTDGFK 300 FEKLEIHGSL GVIGHAIFHI QDMTPGGEPP REIYQMIDLC GKSIEQIRSF LAAYCKDQTR 360 LGLVTLDDPL SSYYDTICTG LDWVEHYNDG DDDLSPPNST EPESDSEPEP EPEPEPEPET 420 IPESDPVPEP HNGEASTTKP KPKRNMAVQR KRVPKMTMND LSPFFHLTIR DAADKLDVSD 480 SVVKKISRLG NLKRWPQRKL QSLAKDVRVL RKALNSPYEG TSKRVRQEIQ RLQREMVAVC 540 GGVAPTGIEM LQLEEE*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MDNNWNNSSD LFDNSPLISN YIEPDPALVY IFNDQPNVLP QQRNAEQNDP FVVEQDHVSF  60
TGLTIEDVST HSDNDITTGG VSKLDQGGWS MRKRKFSFMD SMIEDHPMHD KDNFPNGENM  120
SAHINLNQLR VWPPAPFDID IDTSFDPFLH NLIDRDISIF DLSNDELVSP SLQQNALPQH  180
QQQVPQNALS KQQNALPQLL HTLPQSQNVY QFGVEQIHVP ILNPTFQEQS LHVNCNFTTG  240
GEVPNIDVGN QSMAEHPLLR HGILNEEDVI AIDHWPSSSK LLSCSCCQIL RQIIHTDGFK  300
FEKLEIHGSL GVIGHAIFHI QDMTPGGEPP REIYQMIDLC GKSIEQIRSF LAAYCKDQTR  360
LGLVTLDDPL SSYYDTICTG LDWVEHYNDG DDDLSPPNST EPESDSEPEP EPEPEPEPET  420
IPESDPVPEP HNGEASTTKP KPKRNMAVQR KRVPKMTMND LSPFFHLTIR DAADKLDVSD  480
SVVKKISRLG NLKRWPQRKL QSLAKDVRVL RKALNSPYEG TSKRVRQEIQ RLQREMVAVC  540
GGVAPTGIEM LQLEEE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G080800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	9e-88	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136870.1	0.0	hypothetical protein PHAVU_009G080800g
TrEMBL	V7ATG7	0.0	V7ATG7_PHAVU; Uncharacterized protein
STRING	XP_007136870.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-06	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Phvul.009G080800.1
Entrez Gene	18619494