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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G062700.1 | ||||||||
Common Name | PHAVU_009G062700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 24868.3 Da PI: 8.7257 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 31 | 76 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G+++W++I+r++ gR++k+c++rw + Phvul.009G062700.1 31 KGPWSAEEDRILTRLVDRYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 76 79*****************************9.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.8e-18 | 85 | 127 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ed+ ++ a++q+G++ W+tIar ++ gRt++ +k++w++ Phvul.009G062700.1 85 PFSPQEDDTIIAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 127 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.895 | 26 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-31 | 28 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-16 | 30 | 79 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-17 | 31 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 32 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-15 | 33 | 75 | No hit | No description |
SMART | SM00717 | 9.5E-16 | 82 | 130 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.64 | 82 | 132 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 85 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-15 | 85 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-12 | 85 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEAFNRTSST ASSSSDSSSS DSNHNNPHRI KGPWSAEEDR ILTRLVDRYG PRNWSLISRY 60 IKGRSGKSCR LRWCNQLSPT VQHRPFSPQE DDTIIAAHAQ YGNRWATIAR LLPGRTDNAV 120 KNHWNSTLKR RAKALLDINV NNNASSEGAT SSAPSRSFED DPLTALTLAP PGISNASVAE 180 DAVLDHRASP ENAPAGFWDM MRDVIAREVR EYVSSSFSDN SNFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-42 | 26 | 132 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-42 | 26 | 132 | 53 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G062700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136655.1 | 1e-164 | hypothetical protein PHAVU_009G062700g | ||||
TrEMBL | V7ASW0 | 1e-163 | V7ASW0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007136655.1 | 1e-163 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 5e-59 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G062700.1 |
Entrez Gene | 18619311 |