PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G060400.2
Common NamePHAVU_009G060400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 519aa    MW: 58337.3 Da    PI: 6.1704
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G060400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-092863231954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Phvul.009G060400.2 286 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 323
                         665559******************************88 PP
2BELL121.34.1e-39157228172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+l  kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag g+ +pYt+lAl++iSrhFrcL+dai+ qi
  Phvul.009G060400.2 157 ERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGFGAVEPYTALALRTISRHFRCLRDAISVQI 228
                         6899999**************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.5E-5987226IPR006563POX domain
PfamPF075261.6E-4993225IPR006563POX domain
PROSITE profilePS5007112.438264327IPR001356Homeobox domain
CDDcd000863.06E-12267328No hitNo description
SMARTSM003891.6E-9267331IPR001356Homeobox domain
SuperFamilySSF466891.33E-17268335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28270333IPR009057Homeodomain-like
PfamPF059202.4E-17284323IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPSTASVSPF QYQYHDTGLL PLMTDFSNPK GTLSLKDDDA YNLREDFRSD GCMGSVSSGG  60
FHEIIKKESF YSPHPSMCLK EVPSDLPGYS NSILNSQYLR AAQELLDEIV SVRKALKQPG  120
MEKQENHRDI GLDGSKNSYE KSTQMSSAPN GELSSAERQN LLDKKTKLLS MLDEVDKRYR  180
QYCHQMQIVV SSFDMVAGFG AVEPYTALAL RTISRHFRCL RDAISVQIQV TQRSLGEQEG  240
IPRLRYVDQQ LRQQKALQQL GVMRQAWRPQ RGLPESSVSI LRAWLFEHFL HPYPKDSEKI  300
MLARQTGLTR NQVANWFINA RVRLWKPMVE EMYNEEFGDF EMNCNLSSEN TVKGKRDDVQ  360
ESDSNLVTVD NAQPQPLAEL DRGVNAENMV MHSGTEKLQG DQNLRLGMNN INSSSNNNLH  420
SISTNPNGGY GSLIGSSHAT YDLSELGNFT VGGHVSLALE LRNCESDGFS MSEDAIHKRG  480
NQTLASSPET DLLDYHFTDS GKQQHRFGNP HLLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16273331563Homeobox protein Meis2
4xrm_B3e-16273331563Homeobox protein Meis2
4xrs_A3e-16273330158Homeobox protein Meis1
4xrs_B3e-16273330158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G060400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-95AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136630.10.0hypothetical protein PHAVU_009G060400g
RefseqXP_007136631.10.0hypothetical protein PHAVU_009G060400g
TrEMBLV7ASQ70.0V7ASQ7_PHAVU; Uncharacterized protein
STRINGXP_007136630.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-104BEL1-like homeodomain 7