PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G058100.1
Common NamePHAVU_009G058100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 98aa    MW: 11097.5 Da    PI: 9.4694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G058100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-09652347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                         WT+   +++ +a + + ++   +W+  ar +g g+t +++k ++ k+
  Phvul.009G058100.1  6 GWTPKQNKRFENALAIFDKDtpdRWHNLARAVG-GKTVEDVKRHYEKL 52
                        6********************************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.162257IPR017884SANT domain
SMARTSM007174.4E-7355IPR001005SANT/Myb domain
SuperFamilySSF466892.2E-12561IPR009057Homeodomain-like
PfamPF002493.3E-6652IPR001005SANT/Myb domain
CDDcd001677.69E-7753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSQGWTPK QNKRFENALA IFDKDTPDRW HNLARAVGGK TVEDVKRHYE KLVEDVKQIE  60
EGHVPLPNYR TVATMAGSIR GYSYMDAENR MKGMSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30173177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G058100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-104AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136596.16e-69hypothetical protein PHAVU_009G058100g
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ9SIJ55e-33RADL2_ARATH; Protein RADIALIS-like 2
TrEMBLV7ATE91e-67V7ATE9_PHAVU; Uncharacterized protein
STRINGXP_007136596.12e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-35RAD-like 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang B, et al.
    RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity.
    PLoS Genet., 2018. 14(12): p. e1007839
    [PMID:30566447]