PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G056800.1
Common NamePHAVU_009G056800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 412aa    MW: 44854.9 Da    PI: 10.561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G056800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-056082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Phvul.009G056800.1 60 FVCEICNKGFQRDQNLQLHRRGH 82
                        89*******************88 PP
2zf-C2H216.13.3e-05136158123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC+ C+k +  +s+ k H++t+
  Phvul.009G056800.1 136 WKCERCSKKYAVQSDWKAHMKTC 158
                         58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-75982No hitNo description
Gene3DG3DSA:3.30.160.601.3E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PfamPF121716.3E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355220101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7131157No hitNo description
SMARTSM0035577136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MTEPQNPSPF THSSASEIAP QPQPQPPPPP KRKRSLPGMP DPDAEVIALS PKTLMATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RGSKEPRKKA YVCPEPSCVH HNPARALGDL  120
TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGS REYRCDCGAL FSRRDSFITH  180
RAFCDVLAQE SAKAQNVSTS NADVPSSPPA PPLTPSATVV SPTLSIQSSE NPRKLSPMSP  240
NATCFVTSST PSGSTVCTTV FASVLAPSTT TTHSQSQSPS PSTSSFFNLM SNLARSDNPK  300
AISNLREPTS LSLSSPLYLS NNDSPHFTAS PQPALSATAL LQKAAQMGAS SGSLLRGLGL  360
AKTPSSSSSL GKHQRFNINA TTTAQWCWEK RVIFPLKQNS NRATRQIILN K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35132201372Zinc finger protein JACKDAW
5b3h_F4e-35132201372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18698KLRQRGSKEPRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G056800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-175AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136579.10.0hypothetical protein PHAVU_009G056800g
SwissprotQ9LVQ71e-124IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV7AVE90.0V7AVE9_PHAVU; Uncharacterized protein
STRINGXP_007136579.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]