PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 28226.2 Da PI: 5.3557

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G049600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	34	86	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe ++++ +++ +LA+ lgL+ rqV +WFqNrRa++k Phvul.009G049600.1 34 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 86 568*************************************************9 PP
2	HD-ZIP_I/II	121.9	3.1e-39	32	124	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+krr+s+eq+++LE Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+e+L+ el Phvul.009G049600.1 32 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVEL 122 579*************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Phvul.009G049600.1 123 QK 124 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.98E-18	24	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	28	88	IPR001356	Homeobox domain
SMART	SM00389	3.0E-16	31	92	IPR001356	Homeobox domain
CDD	cd00086	1.32E-13	34	89	No hit	No description
Pfam	PF00046	6.8E-17	34	86	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-19	34	95	IPR009057	Homeodomain-like
PRINTS	PR00031	8.6E-6	59	68	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.6E-6	68	84	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.6E-12	88	128	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MEGDENIQAS KGKNVESFAC LEASRKKNKK IENKRRFSDE QIRSLECIFE TESKLEPRKK 60 MQLARDLGLQ PRQVAIWFQN RRARWKSKRI EQEYRKLKDE YDNLASRFES LKKEKESLQV 120 ELQKLSDLVE SSHDGGREDK GAKEHSIEDG GSGSGYSSWK PEAKPRFSTE GVEERVGVYS 180 DDQNENSIIR SEKSEDKGHQ LLRVDDNDQA EIPLASLEKW YSSVDPNGIL DQSCSSSQWL 240 DFWT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G049600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093544	0.0	BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136490.1	1e-178	hypothetical protein PHAVU_009G049600g
TrEMBL	V7ASD2	1e-176	V7ASD2_PHAVU; Uncharacterized protein
STRING	XP_007136490.1	1e-177	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12005	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	5e-44	homeobox 7

Link Out ? help Back to Top
Phytozome	Phvul.009G049600.1
Entrez Gene	18619177