PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G047500.1
Common NamePHAVU_009G047500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 279aa    MW: 30490.1 Da    PI: 8.8828
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G047500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.91.2e-393392261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s
  Phvul.009G047500.1 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRS 92
                        7899******************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-302991IPR003851Zinc finger, Dof-type
PfamPF027015.7E-343491IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2643791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDTAQWAQGI GVVKPMEGSK PPPMLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP  60
RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSTPSVPSPA SPPTKKLPDL TTPNFPQSAS  120
QDPKIHQGQD LNLAYPPAED YNTVSKFIEV PYSTELDKGS LQNATSSSTP SQLSAMELLK  180
TGIASSRGLN SFMPMYNSTG FPLPDFKPPP GLNFSLEGFE NGYGGLQGIQ EGPTGARILF  240
PVEDLKQQVP TTNEFDQQNR SQGDSTGYWN GMLGGGSW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G047500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136465.10.0hypothetical protein PHAVU_009G047500g
TrEMBLV7ASA70.0V7ASA7_PHAVU; Uncharacterized protein
STRINGXP_007136465.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.43e-54Dof family protein