PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G043200.1
Common NamePHAVU_009G043200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 389aa    MW: 43429.8 Da    PI: 6.5103
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G043200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.8e-28229289259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqKe+ gs++prsYYrCt++   +C++kk v+r +++ +++e+tY+g+H+++
  Phvul.009G043200.1 229 EDGFTWRKYGQKEILGSKYPRSYYRCTHQklyECQAKKMVQRLDHNANIFEVTYRGKHTCH 289
                         7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-27224290IPR003657WRKY domain
SuperFamilySSF1182907.72E-25225290IPR003657WRKY domain
SMARTSM007741.3E-36228290IPR003657WRKY domain
PfamPF031062.5E-25229289IPR003657WRKY domain
PROSITE profilePS5081120.277229291IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MFFLYSCFDF SLTTDTTPQH LHRSLVRTLH FQTHINIIIT TFLYFQISPH ENCKLLEAME  60
EVINSIHRAS ELIQRLEQDL PNMVNQPGTL SLSIDEITEA ITAAKEKLLL ISRHNQTSES  120
PPMLLHETTP QQPQMDATLM QEWLRSSHAL TMDQLFQMQQ RAARSSLQIG EMGGREVEDS  180
ERSMGSEGDQ GQGIHAPSRP RRRSREANQE KKKILVPAPQ FGNTEMPPED GFTWRKYGQK  240
EILGSKYPRS YYRCTHQKLY ECQAKKMVQR LDHNANIFEV TYRGKHTCHM SSTAPSSSSL  300
PLEQLLVDMT QSSNTISSQL SPSVNLSLLP GSGAAATTSG RGGASTSRFG ADYAVVDMAD  360
AMFNSGSSSG NNSMEFLFSP AEDKSDAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-16229288968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G043200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-152AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136416.10.0hypothetical protein PHAVU_009G043200g
TrEMBLV7ASV90.0V7ASV9_PHAVU; Uncharacterized protein
STRINGXP_007136416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.17e-46WRKY DNA-binding protein 55