PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

GATA

Protein Properties

Length: 277aa MW: 30488.8 Da PI: 6.2333

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.009G035400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	54.3	1.9e-17	189	225	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Phvul.009G035400.1 189 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGT 225 *********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.587	53	88	IPR010399	Tify domain
SMART	SM00979	9.6E-13	53	88	IPR010399	Tify domain
Pfam	PF06200	2.9E-13	57	87	IPR010399	Tify domain
Pfam	PF06203	3.2E-16	121	163	IPR010402	CCT domain
PROSITE profile	PS51017	12.669	121	163	IPR010402	CCT domain
SMART	SM00401	2.2E-16	183	236	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.528	183	242	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.28E-12	184	235	No hit	No description
CDD	cd00202	5.57E-17	188	234	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.2E-16	188	230	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	3.4E-15	189	225	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	189	216	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MYDPMNQIVP AEDNDADASD QHIHYSSHTI EDVGADVEDV SAVSLYVSPP EISVQDSSQL 60 TLSFRGQVYV FDAVTPDKVQ AVLLLLGGSE LTPGSQCAVE LSPQNHTGSV EFPARCSLPQ 120 REASLNRFRQ KRKERCFDKK VRYSVRQEVA LRMHRNKGQF TSSKKQDGAN SWGSDQESGQ 180 EAVQSENSCT HCGTSSKSTP MMRRGPSGPR SLCNACGLFW ANRGTLRDLS KRNQEHSLVP 240 LEQVDVGSNN DLDCRSVIPA QHDNHVNDIK ALVSDR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.009G035400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096895	0.0	BT096895.1 Soybean clone JCVI-FLGm-21G2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007136308.1	0.0	hypothetical protein PHAVU_009G035400g
Swissprot	Q9LRH6	6e-89	GAT25_ARATH; GATA transcription factor 25
TrEMBL	V7ARM1	0.0	V7ARM1_PHAVU; Uncharacterized protein
STRING	XP_007136308.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	2e-91	GATA-type zinc finger protein with TIFY domain

Link Out ? help Back to Top
Phytozome	Phvul.009G035400.1
Entrez Gene	18619030

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]