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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.009G026900.1 | ||||||||
Common Name | PHAVU_009G026900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bZIP | ||||||||
Protein Properties | Length: 352aa MW: 39724.5 Da PI: 6.7299 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 67 | 95 | 5 | 33 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka++++Le Phvul.009G026900.1 67 KMRRRLAQNREAARKSRLRKKAYVKQLES 95 6789***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.6E-7 | 59 | 100 | No hit | No description |
SMART | SM00338 | 7.2E-5 | 62 | 123 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.519 | 65 | 100 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-6 | 67 | 100 | No hit | No description |
Pfam | PF00170 | 1.3E-7 | 67 | 96 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 70 | 85 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.9E-25 | 156 | 229 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MKMDIYEPFQ QVGMWGDGFK VDGGLNSIAS PILMVDTNVE GKSEYIPQES RELSGADQET 60 TDKDVNKMRR RLAQNREAAR KSRLRKKAYV KQLESSRMKL MQLELEIGKA RKQGLYMGTA 120 LDASYIGSTS ETINPVIVAF EIEYGQWVEE QHRRNEELRH AFQTQAPDVQ LNVVVQSVLN 180 HYSNLVRMKA DAAKADVLYL LSGVWKASVE RIFLWIGGSR PSQILNIIVP QLEPLTDQQI 240 VGINNLRLNS QQAEDALSQG LEKLQQSLVH DMAVDPFGVG NFELQMAAME KFDALEGFVI 300 QADHLRLQTL LHMSRILSTH QAARGLLALG EYFHRLRTLC SLWASRPCEL P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.009G026900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-121 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007136203.1 | 0.0 | hypothetical protein PHAVU_009G026900g | ||||
Swissprot | Q93ZE2 | 1e-122 | TGA7_ARATH; Transcription factor TGA7 | ||||
TrEMBL | V7ARC4 | 0.0 | V7ARC4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007136203.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1096 | 34 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 1e-118 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.009G026900.1 |
Entrez Gene | 18618941 |
Publications ? help Back to Top | |||
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