PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G008000.1
Common NamePHAVU_009G008000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 377aa    MW: 42566.1 Da    PI: 7.3732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G008000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.9e-52221491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL+ kv + +++    ++evd++++ePw+Lp  +k +e+ewy Fs rd+ky+tg r+nrat +gyWkatgkdke
  Phvul.009G008000.1  22 LPPGFRFHPTDEELITFYLASKVFNGSFTS-VKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKE 111
                         79*************************888.55***************8888899************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl
  Phvul.009G008000.1 112 VFSAsSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149
                         **9977888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6217176IPR003441NAC domain
PROSITE profilePS5100558.61222176IPR003441NAC domain
PfamPF023651.1E-2623149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MLAMEDLLCE LSDHEKRNEQ GLPPGFRFHP TDEELITFYL ASKVFNGSFT SVKFAEVDLN  60
RCEPWELPDV AKMGEREWYL FSLRDRKYPT GLRTNRATGA GYWKATGKDK EVFSASSGTL  120
LGMKKTLVFY KGRAPRGEKT KWVMHEYRLD GDFSLPHPHP HHISKEEWVI CRIFHKSGEK  180
RTPLVQVQGH SDASSSPTKN SLPPLLASPT CFTLELECQS QQSPVLIHHH QDQNHLSHSH  240
PYLFPLHASP QLTNARNHPS FSDLFFKPLH NSQQNCIFKA KEKTAPKVVK TEEATAFYQY  300
HLLGDANNLR VNQNPSNFPN PFPDVEVDAG LMAFSGGPNA EVRDMSTSTA FNRVGLQQVI  360
DAAHIGIDSW PLPQHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-502217620168NAC domain-containing protein 19
3swm_B3e-502217620168NAC domain-containing protein 19
3swm_C3e-502217620168NAC domain-containing protein 19
3swm_D3e-502217620168NAC domain-containing protein 19
3swp_A3e-502217620168NAC domain-containing protein 19
3swp_B3e-502217620168NAC domain-containing protein 19
3swp_C3e-502217620168NAC domain-containing protein 19
3swp_D3e-502217620168NAC domain-containing protein 19
3ulx_A4e-501917912171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G008000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-134AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135979.10.0hypothetical protein PHAVU_009G008000g
TrEMBLV7ATN90.0V7ATN9_PHAVU; Uncharacterized protein
STRINGXP_007135979.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-97NAC family protein